Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3543 ATGTGTAGTAGAGGTCATTGGAGACCAGCTGAGGATGATAAACTTCGAGAGTTGGTGGAGCACTATGGACCCCATAATTGGAACGCTATAGCTGAGAAGCTCCGAGGAAGATCAGGGAAGAGTTGCAGGTTGAGATGGTTCAATCAATTGGACCCAAGAATAAATACAAGTCCTTTCACAGAGCAAGAAGAAGATCGTCTTGTAGCTTCTCACCGAATTCATGGTAATAGATGGGCTGTGATTGCAAGACTTTTCCCTGGACGGACCGACAACGCTGTCAAGAATCACTGGCATGTCATGATGGCAAGGATTCGTCGAGAAAGATCTAAACAACTTTATGCCAAACGCCCTTCGCATGCACCTCATCAAACAAACCCTCACCATAACACTAACTATGACACAATAACCCTCCCTTCTAGTTCTGACAAGCCTAGTTATGGTAAGTGTAGCTACACTCTTCTCACACATTACCCTTTCCAATTTACCAACAACTTTCACTTTCAAGCTCCAAGTTCTAGTTCCACAATGCTTCAAGATAAAAGTCAATCAGTTGAGTTCTACGATTTTCTTCAAGTAAATACCGATTCCAATAAAAGCGAAGTGACTGACAATGCCAGAAGAGATGATGAGGAAGTAAATCAAAATGCTGAGCCATCGCAGAGCAGAGATGGTGTTCCATTCGTTGATTTTTTGTCTGTTGGAGGCTCCTAA 711 0.429 MCSRGHWRPAEDDKLRELVEHYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINTSPFTEQEEDRLVASHRIHGNRWAVIARLFPGRTDNAVKNHWHVMMARIRRERSKQLYAKRPSHAPHQTNPHHNTNYDTITLPSSSDKPSYGKCSYTLLTHYPFQFTNNFHFQAPSSSSTMLQDKSQSVEFYDFLQVNTDSNKSEVTDNARRDDEEVNQNAEPSQSRDGVPFVDFLSVGGS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3543 236 Gene3D - 4 55 - -
Ssu5g3543 236 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Ssu5g3543 236 PANTHER MYB PROTEIN-RELATED 1 234 - -
Ssu5g3543 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Ssu5g3543 236 PANTHER MYB-RELATED PROTEIN A-LIKE 1 234 - -
Ssu5g3543 236 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Ssu5g3543 236 SMART sant 55 103 IPR001005 -
Ssu5g3543 236 SMART sant 3 52 IPR001005 -
Ssu5g3543 236 MobiDBLite consensus disorder prediction 197 227 - -
Ssu5g3543 236 CDD SANT 7 48 IPR001005 -
Ssu5g3543 236 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Ssu5g3543 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Ssu5g3543 236 MobiDBLite consensus disorder prediction 200 216 - -
Ssu5g3543 236 CDD SANT 58 101 IPR001005 -
Ssu5g3543 236 Gene3D - 57 131 - -
Ssu5g3543 236 Pfam Myb-like DNA-binding domain 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3543 Ssu-Chr5 86551738 86552827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3543 1 236 MYB Transcription Factor Family AT1G17950 56.349 7.80e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g3543 Myb_DNA-bind_6 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3543 K09422 - gmx:100811746 336.65