Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3542 ATGATGGTATATGTTTCTGTGGACTTTACTGGCATTCAGTCTGTGATGACAGGATGTGATTCAAGAAATCTTGCCATACTGCCCTTAGGATTCTCTATTATTCCTGATGGACTTAAGTCAAGGCTATTAAGTAATGTTGTTGGAGCTACTAACAAGGATAAGGTCAATGGACAAGAATCGTCCTCCATGGGAACAGAACCTAGTGGAGTAGGCAAGGCCAATAATTTTGATGATATTCCAATTAGAACATTTGTTTACACAACTTCACCAGATAATGAAGTGCATAAAGATGCAAAGGATTATGAAGCACCTAAGAAGAGGGAAAATAATGGCCACCTTCATAAGAACCACCATCTCTACAATAACAGTCACAGGCATCATCAACTTAAATCCCCAAAGCCACAATCACAGTCACGTTCATTGAATGATCACAAACGCAAAAATGGCAAAGGAAGTGgatcaaactctcctccatcaCATGTGAAAAGGCCAAGAATCATTGCCTAA 507 0.3767 MMVYVSVDFTGIQSVMTGCDSRNLAILPLGFSIIPDGLKSRLLSNVVGATNKDKVNGQESSSMGTEPSGVGKANNFDDIPIRTFVYTTSPDNEVHKDAKDYEAPKKRENNGHLHKNHHLYNNSHRHHQLKSPKPQSQSRSLNDHKRKNGKGSGSNSPPSHVKRPRIIA 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3542 168 MobiDBLite consensus disorder prediction 110 132 - -
Ssu5g3542 168 MobiDBLite consensus disorder prediction 92 109 - -
Ssu5g3542 168 MobiDBLite consensus disorder prediction 52 69 - -
Ssu5g3542 168 MobiDBLite consensus disorder prediction 52 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3542 Ssu-Chr5 86538241 86538982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3542 1 54 Homeobox Transcription Factor Family AT1G79840 48.148 2.79e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3542 K09338 - gmx:100783759 105.145