Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3541 ATGGCGGACACAAACACAAACTCAGTTGATGTGATTTTGGACTTTCTTAGGAGGAACCGTTTCACTAGAGCTGAGGCTGCTTTGCGCAGTGAGATCAATAATCGTCCCGACTTGAATGGCTTCCTTCAGAAGCTTACCTTGGAAGAAAAGGCCACACGCGACGCACCTCAAAATAATAAGGGGAAGCCTGTGCTAAAGATTCAAGGGGTGGAACCTCATGACAGTCTTGAAGTTTCTAAAGAACTGATTGTGAAGGAAATAGAGTGTGGGAATGGTCGGAATGCCACTGAAAGCAAATGGAAAACTACTGCTCCCTCTATGGTGGAGCGGAATAAATCTGATGAGGTGGTTGGGACAAGTGACAAGAACTTCATTTTCTCTAAGAGTTCGGAGGATGGTATACATGATTTATACTCATGGAAGTTCAACCCTGGCAATGGTCCTGTGGAGCCTTACCAAAATGATGGTGGTAGTAGGGCTAATAATACTTTGAGTTTGAAGGCCACTGCATCTCAACAATCAAAATGTCTAATTAATGAAGCTGTTGATGTAATTGCTGCCAATACCAATTCAAAGTCTGGGAAGGAAAATGCTGTGCTTGCTGACAAAAAATCCTTGTGGCCTGGAAGTAGTAGTAAAGCCTCTGTGGATCTTAAGTACGACCTCGTGCAAAGCAAAGAACCTATGGAACTTGATCGGCTGCTTAAATTCAATAGTTCATCTCTTAAAGGAAACTTTACAGATAATCCCTGGTCAAGAATGGATGAGAATGTGAATTCGTCTTCAGACTCCTGCAAAGATTGTTCTGTCAAGACTGTCTTCCCCTTCTCAAAAGGGGATGTGTCTACAAGCTTTGATGGAGCCAAATATTCTGacaaaaaagaggagaaaaacaGGGGAGAAATTAGTGATACTAAGACATCTATAAAAGAGCAGGTGGATGAATTAGGGAGGGCTATTTACTTGGTCAAGACACAAGGCAGTTCTGCACAGAAGATGATTGGCTGCTTAAATTTTCCTCTTCCACCTGAAAATCAGAAGGAAGAGTTTCCTAGGCTTCCTCCGGTTAAACTCAAGTCAGATGATAAGCCCTTGGTTGTTAATTGGGAGGAGAAGTTTGAACGAGGTGGACCAACTTCAAAACTCCCTGGTGCTGACAGCACTTTACTTATTGGTTCATATCTGGATGTACCTATTGGACAAGAAATTAACCCTTCAGGTATGAGGAGGGCTACAGGGGGCAGTTGGTTATCTGTAAGTCAAGGGATAGCGGAGGATACATCTGATCTTGTATCAGGATTTGCTACAGTTGGTGATGGGTTGAGCGAATCTATTGACTATCCGAATGAATATTGGGACTCTGATgaatatgatgatgatgatgatgttgggtACATGAGACAACCTATTGAGGATGAGGCCTGGTTTTTGGCACATGAAATTGATTACCCTAGTGACAATGAAAAGGGGACTGGGCATGGAAGTGTTCCAGATCCTCAGGAAAGAGGTCCAGCCAAAGATGAGGATGATGATCAATCCTTTGCTGAGGAGGATTCTTACTTCTCTGGGGAGCGATATCTTCAGGCAAATAATGTTGAACCAGTCACAGCTACTGATGATCCTATTGGTCTAACAGTTACTGACTATGGAAGGACTAATGATAATGACTTAATGGCTCAATATGATGGACAATTGATGGATGAAGATGAATTGAACCTGATGTGTGCAGAACCAGTATGGCGGGGCTTTGTCCCTCAGACAAATGAACTCATCATGCTAGGAGATGGGAGGGttttgaatgataatgtaagaTCACGGCTAGAAGACATCAGTATGGATGATGATCAACATGGTTCAGTTAGGTCAATTGGGGTAGGGATCAACAGTGATGCTGCAGATATTGGTAGTGAAGTGCGTGAAAGTTTGGTTGGTGGTAGTAGTGAAGGAGATTTAGAATATTTCCGTGATCGTGATGCCGGGCTTGGTGGTTCCAGGCACTCTCATCAAGATTTGGATAAGACATCTACtaacaaatcaaacaaaaataagaacaatgACAAGAGTGAGTCAAATAAATATGTCGTAGGATGTGATAAAAATGCACAGTTGCAGATGAAAACTCATGGTGATGGAAACTTCTCGTTCCCCCTGTCTATGAAGGATGACCAGATGATTCAGGCTGCCACCAATAAGTCCCTGTGGTCAAATAACGGCAATGCAGATGAAACTGATGACTGTCTTAGTGCATTTGTGGGAACTGATGACATGCTTGCTTCATGGAGGCGAAAGAGCAGCGATTCATCACCTGTTAAAAGTTCTAGGGATGAGAATAATGCCAACATGGTAAGATCCACAAACTCTTCTCCGACAACACTCTCAAATTATGGATATTCTGAAAGAGAGCATGTGAAGGTAGAAGAGGATGAAAAGGCTGGAATTGCAAGGGAAGATGATCTAGGAGCATCGCTAGAGGATGAAGAGGTAGTGGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCATAGGAAAAACAGAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGAAGGTACCATGTTACTGAGTATCTGGGATCTGCTGCATTTAGCAAAGCTATACAAGCTCATGACCTACATACAGGCATGGATGtttgtgttaaaattataaagaacaaCAAGGATTTTTTTGACCAAAGTCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCAGCAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAGAGCATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTACGagtttcataaatttaatagaGAATCAGGTGGTGAAGTGTACTTTACTATGCCAAGATTGCAGGTTTGTGTGTTGGAAGACGCACTTCAGTTTCTGCATAGCCTTGGACTAATACACTGTGACTTGAAACCAGAGAATATCTTGGTTAAAAGTTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAAACAGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGCTGCATCTTGGCAGAACTCTGTACTGGCAATGTCCTCTTCCAAAATGATTCACCTGCAACATTACTTACTCGGGTGATTGGGATCATTGGTCCAATTGATCAAAGTATGCTTGCAAAAGGACGGGACACATATAAGTACTTCACCAAAAATCATATGCTTTATGAAAGGAATCAGGAAACCAACAGGTTAGAATACTTGATTCCGAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTTGCTCACTTGCTTGAAGTCAATCCTAAGAAGCGGCCGTCTGCATCTGAGGCCCTGAAGCACCCGTGGTTATCATATCCTTATGAACCCATATCATCTTGA 3567 0.4068 MADTNTNSVDVILDFLRRNRFTRAEAALRSEINNRPDLNGFLQKLTLEEKATRDAPQNNKGKPVLKIQGVEPHDSLEVSKELIVKEIECGNGRNATESKWKTTAPSMVERNKSDEVVGTSDKNFIFSKSSEDGIHDLYSWKFNPGNGPVEPYQNDGGSRANNTLSLKATASQQSKCLINEAVDVIAANTNSKSGKENAVLADKKSLWPGSSSKASVDLKYDLVQSKEPMELDRLLKFNSSSLKGNFTDNPWSRMDENVNSSSDSCKDCSVKTVFPFSKGDVSTSFDGAKYSDKKEEKNRGEISDTKTSIKEQVDELGRAIYLVKTQGSSAQKMIGCLNFPLPPENQKEEFPRLPPVKLKSDDKPLVVNWEEKFERGGPTSKLPGADSTLLIGSYLDVPIGQEINPSGMRRATGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPAKDEDDDQSFAEEDSYFSGERYLQANNVEPVTATDDPIGLTVTDYGRTNDNDLMAQYDGQLMDEDELNLMCAEPVWRGFVPQTNELIMLGDGRVLNDNVRSRLEDISMDDDQHGSVRSIGVGINSDAADIGSEVRESLVGGSSEGDLEYFRDRDAGLGGSRHSHQDLDKTSTNKSNKNKNNDKSESNKYVVGCDKNAQLQMKTHGDGNFSFPLSMKDDQMIQAATNKSLWSNNGNADETDDCLSAFVGTDDMLASWRRKSSDSSPVKSSRDENNANMVRSTNSSPTTLSNYGYSEREHVKVEEDEKAGIAREDDLGASLEDEEVVAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQVCVLEDALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLTRVIGIIGPIDQSMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3541 1188 Pfam Protein kinase domain 879 1179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3541 1188 SUPERFAMILY Protein kinase-like (PK-like) 868 1181 IPR011009 -
Ssu5g3541 1188 Coils Coil 831 851 - -
Ssu5g3541 1188 PANTHER - 10 1186 - -
Ssu5g3541 1188 SMART serkin_6 879 1179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3541 1188 ProSiteProfiles Protein kinase domain profile. 879 1179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3541 1188 PANTHER DUAL SPECIFICITY PROTEIN KINASE 10 1186 - -
Ssu5g3541 1188 Gene3D Phosphorylase Kinase; domain 1 873 960 - -
Ssu5g3541 1188 MobiDBLite consensus disorder prediction 483 516 - -
Ssu5g3541 1188 MobiDBLite consensus disorder prediction 762 797 - -
Ssu5g3541 1188 MobiDBLite consensus disorder prediction 640 693 - -
Ssu5g3541 1188 CDD PKc_DYRK_like 879 1179 - -
Ssu5g3541 1188 MobiDBLite consensus disorder prediction 760 797 - -
Ssu5g3541 1188 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1003 1015 IPR008271 GO:0004672|GO:0006468
Ssu5g3541 1188 Gene3D Transferase(Phosphotransferase) domain 1 933 1179 - -
Ssu5g3541 1188 MobiDBLite consensus disorder prediction 650 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3541 Ssu-Chr5 86527613 86536200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3541 878 1174 MAP Kinase Gene Family AT5G19010 30.915 2.03e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Ssu5g3541 Pkinase 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3541 - - lang:109331412 1896.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3541 5 86527613 86536200 Ssu5g3541 5 86527613 86536200 ECH