Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3537 ATGTTAGTCAATAACTCATCTCCCTCGTCAGTTCCCACTTCTGAGCCCTTTTCCTGCGCCGAGAATGATACTGCTACTaataaaaggaagagaaggCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCCAAGACCTTGCTGGAATCAGATCGTTATGTGTGCGAGATCTGCAACCAGGGATTCCAAAGGGACCAGAACCTTCAGATGCACCGGCGGCGCCACAAGGTGCCGTGGAAGCTGTTGAAGAGGGAGACGCCGGTGGTGAAGAAGCGAGTGTTTGTTTGCCCCGAGCCTACCTGTTTGCACCATGACCCGTGCCATGCTCTCGGTGATCTCGTTGGCATAAAGAAGCATTTCAGGAGGAAACACAGCAATCACAAGCAATGGGTCTGCCAGAGATGCTCCAAAGGCTACGCGGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAGCACCAAGACGCGTGCAACGTGGGGCGGTTGGGGCCAGAAACGCAGGCAGGTGCATGCTTGTCTCGAACAGCTTCAAGCCCTTCAAGCGACAATAATTTCAGCACAGGTGGTCCTTGGCCAGGGGGTGTAATTATTCCAAAGCCCACCGTAACTACAGAACCCTCATTCACGAATGCCACTGCCGAAACCAACAACAAACTCCACCCCAACCTGGAGCTTCAGCTCTCTACAGCCACTCCAATTGATGTGATTGCGGTTGCATCACCCAGAGACTTGCAGCTATGCATAGGGTCATTggaaaaaatcaacaataataataataataatgaggaGGAGGAGAAGTCATTGGTTCAAGAGCAAGCACGTGACCAGTTGAGGATAGCGATGGCGGAGAAGGCGTATGCGGAAGAGGCAAGGAGGCAAGCCAAGAGGCAGATCGAACTCGCGGAACTTGAGTTCACTAACGCCAAGAGGATAAGACAACAAGCCTTGGCGGAACTGGACAAAGCCTATGCCTTGAAGGACCATGCAATCAAACGGATCAATTCAACCATGCTTCAAATCACTTGCCTTGCTTGCAAGCACCATTTTCAATCGCGAACCATAACTGCTCCCCCGGACGAGCACTCTTTGGTGTTGAGCTACATAACAACAGAAGCTGGCCAAGTAGCTAGAAAAACATCGTGTCAAAATTAA 1227 0.4947 MLVNNSSPSSVPTSEPFSCAENDTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCQRCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQAGACLSRTASSPSSDNNFSTGGPWPGGVIIPKPTVTTEPSFTNATAETNNKLHPNLELQLSTATPIDVIAVASPRDLQLCIGSLEKINNNNNNNEEEEKSLVQEQARDQLRIAMAEKAYAEEARRQAKRQIELAELEFTNAKRIRQQALAELDKAYALKDHAIKRINSTMLQITCLACKHHFQSRTITAPPDEHSLVLSYITTEAGQVARKTSCQN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3537 408 Gene3D Classic Zinc Finger 35 98 - -
Ssu5g3537 408 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Ssu5g3537 408 MobiDBLite consensus disorder prediction 197 213 - -
Ssu5g3537 408 Coils Coil 276 299 - -
Ssu5g3537 408 SMART c2h2final6 98 128 IPR013087 -
Ssu5g3537 408 SMART c2h2final6 134 161 IPR013087 -
Ssu5g3537 408 SMART c2h2final6 57 79 IPR013087 -
Ssu5g3537 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Ssu5g3537 408 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g3537 408 PANTHER OS03G0310200 PROTEIN 2 398 IPR039288 GO:0009630
Ssu5g3537 408 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Ssu5g3537 408 MobiDBLite consensus disorder prediction 197 219 - -
Ssu5g3537 408 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 2 398 - -
Ssu5g3537 408 Gene3D Classic Zinc Finger 119 195 - -
Ssu5g3537 408 MobiDBLite consensus disorder prediction 1 44 - -
Ssu5g3537 408 Coils Coil 302 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3537 Ssu-Chr5 86410576 86412788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3537 23 395 C2H2 Transcription Factor Family AT2G01940 56.049 1.35e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g3537 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3537 K25871 - gmx:100800187 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3537 5 86410576 86412788 Ssu5g3537 5 86410576 86412788 ECH