Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3534 atggaaGGCGAGAAGTGGAACAGTGTATACAGAGAGTGCTTGAGAAACCATGCAGCGAGCCTGGGAAGCTACGCCACGGACGGGTGCGGCGAGTTCACGGTGGCCGGCGGGGGGCTACAATGCGCGGCATGCGGGTGCCACCGCAACTTCCACCGGAAAGTGAAGTACCCCGCGGCTCCAGAAAGCCCGCCGGCGATGGAGTATGGCGGTGGGAGAGGGGTGGATGAGTCCGGGTCAGGGAGTAAGAAGCGGTTCAGGTCAAAGTTCACGGCAGATCAGAAGGAGAAGATGCTTGCGTTTGCGGAGAAGCTTGGTTGGAAGCTTCAGAGGAAGGATATGGATGATGAGATTGAGAGGTTCTGCGCAAGTGTTGGAGTTAGCAGGCAAATCTTCAAAGTTTGGATGCATAACCATAAGAACaattcctcctcttcttctgcTTCTACCGCCAATGTCTCCTCTCTCACCCAGTAA 474 0.5295 MEGEKWNSVYRECLRNHAASLGSYATDGCGEFTVAGGGLQCAACGCHRNFHRKVKYPAAPESPPAMEYGGGRGVDESGSGSKKRFRSKFTADQKEKMLAFAEKLGWKLQRKDMDDEIERFCASVGVSRQIFKVWMHNHKNNSSSSSASTANVSSLTQ 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3534 157 Gene3D - 71 146 - -
Ssu5g3534 157 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 4 148 - -
Ssu5g3534 157 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 82 140 IPR006455 -
Ssu5g3534 157 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 10 54 IPR006456 -
Ssu5g3534 157 MobiDBLite consensus disorder prediction 138 157 - -
Ssu5g3534 157 SUPERFAMILY Homeodomain-like 69 140 IPR009057 -
Ssu5g3534 157 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 10 53 IPR006456 -
Ssu5g3534 157 Pfam ZF-HD protein dimerisation region 9 54 IPR006456 -
Ssu5g3534 157 MobiDBLite consensus disorder prediction 61 88 - -
Ssu5g3534 157 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3534 Ssu-Chr5 86371047 86371520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3534 10 140 ZF-HD Transcription Factor Family AT4G24660 46.108 1.17e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu5g3534 ZF-HD_dimer 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3534 - - pvu:PHAVU_002G332400g 254.603