Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3526 ATGATTAAAATGCCCGACGACAAACCCATCATGGAAACCGATCTTTCCCTGCACATTAGCACCCCTCTCCCAAACCAAAATAGTGTTCCTTCTTCAGTTTGCACCGAATTAAGGGATTCTGCCTTTGATATACGGCCAGGGCCAGCTGATGCTGATGGCTTCCAATCCAACAACGATATGCCTATCAGAGGCAGTACACAGGTCTTTGTTACAGTCAAAGAAGCAGCAGCAAGGCAAACAAATCATGGGATAAGACTTATCAATAAAGAAGTGCCACTACTTTCATGCAACTCTTCGCTTCCCTTTTATCCTTTGGACTACAATTCATCATTAATTGACTCCAGATTTCCTCTATACCCACAAGCTGGTTCAGCTGAATCACCTTCTTGTTGTTGGCCTTCCAATAATGGTAGTATTTGGGGTATAGAAGTAGAACCAATCTCTAGGTTTAATGAGATGAGCATTATGGAGAGTTTAGGACCCAAGCAGTTTCAGTACTTGAATCAGTTTGGTATTGGAGCTTCTGATTTTTCAAATGGATATGCGAGGTCAAGAAAACTGCCTAGGCTGCAACGAAGTAAGAGAACCACGAGGGCTCCAAGAATGCGTTGGACAACTTCTCTTCATGCTCGCTTTACTCATGCTGTTGCCCTGCTTGGGGGCCATGAAAGGGCTACACCAAAGTCAGTTTTGGAGCTCATGGATGTCAAAAATCTAACACTATCTCATGTCAAGAGCCATTTGCAGACGTATCGGACTGTTAAAAACACGGACAAGCCTGCAGCTTCTTCGGGCGTAGATGAAGATTTCGTGTCTCCAACACCACCCCTTAATCAAAATGAGCACAGTTTCACTAATAAGAGAGGACTTTCATATGCATCTCTAAACCAAGATCTGGGTTACACTTCCAGCAGCCAATGGGATAATTCTTCCAGATAA 939 0.4356 MIKMPDDKPIMETDLSLHISTPLPNQNSVPSSVCTELRDSAFDIRPGPADADGFQSNNDMPIRGSTQVFVTVKEAAARQTNHGIRLINKEVPLLSCNSSLPFYPLDYNSSLIDSRFPLYPQAGSAESPSCCWPSNNGSIWGIEVEPISRFNEMSIMESLGPKQFQYLNQFGIGASDFSNGYARSRKLPRLQRSKRTTRAPRMRWTTSLHARFTHAVALLGGHERATPKSVLELMDVKNLTLSHVKSHLQTYRTVKNTDKPAASSGVDEDFVSPTPPLNQNEHSFTNKRGLSYASLNQDLGYTSSSQWDNSSR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3526 312 Pfam Myb-like DNA-binding domain 201 252 IPR001005 -
Ssu5g3526 312 Gene3D - 199 256 - -
Ssu5g3526 312 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 11 311 - -
Ssu5g3526 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Ssu5g3526 312 MobiDBLite consensus disorder prediction 273 289 - -
Ssu5g3526 312 MobiDBLite consensus disorder prediction 252 289 - -
Ssu5g3526 312 SUPERFAMILY Homeodomain-like 197 254 IPR009057 -
Ssu5g3526 312 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 11 311 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3526 Ssu-Chr5 86280365 86282052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3526 180 312 G2-like Transcription Factor Family AT5G16560 61.151 4.01e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu5g3526 Myb_DNA-binding 6.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3526 - - gmx:100814432 256.914