Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3522 ATGGTTTTAGGGTGGAGGAGAAGAGGCAAGAACAAGAAGAACCGCCACGAAGGCGGCAAGGTGGAGGAGGTGGTGACGCCCATTCACTTCCGCTGCCCAATTTCTCTCGAGTTAATGAAAGACCCCGTGACGTTGTGCACTGGGATTACCTACGATCGAGAAAGCATAGAAAGGTGGTTTGATGAAGGGAGCTTCACGTGCCCCGTCACCAACCAGATTGTCACCAGCTTCGATCTCATTCCAAACCACACGCTTAGGATGATGATCCAAGATTGGTGCGTGGAGAATCAACAGCATGGCGTCGAAAGAATCCCAACCCCGAGAGTACCCATTACCCCAGTGGAGCTACAAGAGCTCCTTCTTGTTCTGCACGCCGAGGCCTCGCGTCTCGACCAACACGCGTGCCTTGAATTGGTGCAGAGAATTCAGAGGTGGGGTGCGGAGAGTGAGAGAAACATGCGGTGTATGGCGGAGAATGGAGCGCCACCTGCATTAGCCTCTGCGTTTGATGCATTTGCTAATGATTCCGTGGAGAGGAATGCGACTGTGCTTCATGGGATTTTGTCGGCTCTCAATTCCATGTTTCCACACCGCAAACATTTGGGGTCTCGGGCTTCTTTACGTTGTATGGTTTGGTTTTTAAGGCGCCAAGACCTCTCGGGGAAAGAGAACTCTATTGTTGCCCTCGAACAGCTTCTTTCTTTTGGTGATCACCAACACGTGGAGGCTCTCGCGGAAATTGAAGGAATTAACCAACTCTTGCTCGAATTTCTTGACCAAACAATTTTTAGTCCAACCATTACGAAAGCTTCCTTGGCGCTAGTTTGGTATTTGGTTTCGTCTTCTTCTCCTTGCAGTGAGAAAATGAGATTGAAGTTTATTGAATTGGGCATGGTTTCTTTGGTGCTGGACATTCTCGTTGACTCCGAAAGGAGCCTGTGTGAGAAGGCTCTGGCTGTTTTTGACTCCCTCTGCGGTTGTCAACAAGGAAGAGAAAAGGTTTATAGTAATGCGTTAGCGATTCCTCTCTTGGTCAAGAAGTTGCTGCGAGTTTCATCCTTGGGCTCGGATTACTCTGTTTCTGCCATTTGGAAGCTCTGCAAATTTGGAGAAGAAATGGTTCTCATTGAGGCCCTTCAACTCGGTGCATTTCAGAAGCTCTTGTTAGTCTTGCAAATTGGTTGTGGTGATCAGACCAAGGAGAAAGCCACTGAACTCCTCAAATTGTTTAATCCTTACAGGACTGGCGTGGTGGAATGCATAGATTCAGATTTCAAGAACCTTAAAAGATCTATTTAA 1299 0.4781 MVLGWRRRGKNKKNRHEGGKVEEVVTPIHFRCPISLELMKDPVTLCTGITYDRESIERWFDEGSFTCPVTNQIVTSFDLIPNHTLRMMIQDWCVENQQHGVERIPTPRVPITPVELQELLLVLHAEASRLDQHACLELVQRIQRWGAESERNMRCMAENGAPPALASAFDAFANDSVERNATVLHGILSALNSMFPHRKHLGSRASLRCMVWFLRRQDLSGKENSIVALEQLLSFGDHQHVEALAEIEGINQLLLEFLDQTIFSPTITKASLALVWYLVSSSSPCSEKMRLKFIELGMVSLVLDILVDSERSLCEKALAVFDSLCGCQQGREKVYSNALAIPLLVKKLLRVSSLGSDYSVSAIWKLCKFGEEMVLIEALQLGAFQKLLLVLQIGCGDQTKEKATELLKLFNPYRTGVVECIDSDFKNLKRSI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3522 432 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Ssu5g3522 432 Gene3D - 122 421 IPR011989 -
Ssu5g3522 432 SUPERFAMILY RING/U-box 24 102 - -
Ssu5g3522 432 Pfam U-box domain 27 97 IPR003613 GO:0004842|GO:0016567
Ssu5g3522 432 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 431 - -
Ssu5g3522 432 PANTHER WDSAM1 PROTEIN 17 431 IPR045185 GO:0061630
Ssu5g3522 432 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Ssu5g3522 432 SUPERFAMILY ARM repeat 143 405 IPR016024 -
Ssu5g3522 432 CDD RING-Ubox_PUB 30 72 IPR045210 -
Ssu5g3522 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3522 Ssu-Chr5 86242907 86244205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3522 5 430 U-box Gene Family AT5G37490 41.876 7.21e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3522 - - vun:114179193 652.514