Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3521 ATGGAGCAAGGAGATCTTGTAGATCAACTATACTTTGTATATCATGGTGAGCTGCATGAGATAAGGAGGGAAGATGGTGATACAGAAGAGACAATCACATTGAATACTTATAGTTCCTTCGGCCaggtttcttttttttgcaataTGCCTCAAATTTCCACGGTTAAAGCTCGTGAATTTTGCAAGGTTTTGCGACTTGATAAGAAATCCTTTACTGAAATACTGAAGATATACTTTTTAGATGGCCGTATTGTCTTGAACAATCTCCTTGAGGTAAAAGACTTGAATCTCCAGCATAAGCTTTTGGTATCAGACTTCAACCTGACTATTGGAAACCTGGAAACAGAGCTAGCTACGAGGATGAACTGTGCTGCCCATGATGGTCACCTTGATATTGTGAAACATTTTATTGGATTTGGAGCTGATCCCAATAAGACTGATTATGATGGCAGAACACCCTTGCATATCTCAGCATCAAAAGGATATGTAGATATTTCTTCCTTTCTTGTTGAAAAAGGAGTAAATATCAATTCCGCAGATAAATTTGGCACCACTCCCTTGCTTGAAGCCATCAAGAATGGACATGAAGAAGTAGCATCTGTACTTGTTAATGCGGGAGCTATCCTTACTATTGATGATGTTGGCAATTTTCTCTGTATGACTGTTGCAAAGAAGGAGCTGGACCTTTTAAAAAGGGTTCTGGCTTATGGAATTAATCCAAATGCCAAAAACTACGATCAACGTACAGCACTTCACATAGCTGCCTCTGAAGGTTTGTTTACAATGGTTGAATTACTTCTAGAAGCAGGAGCAAGTGTTTTATCTAAGGACAGATGGGGAAATACACCTCTTCATGAAGCTCATACTGGTGGAAATAGAAATATGATCAAAATGCTTGAAGTTGCAAAAGTTTCTCAGTTGGCTGAGTTGTCCAATAATATTCATGGAACTCAAGCAACACCAATGTTGCAGTCAACAGATGAAATTCCCAGAAAGAGATGTATAGTATTTCCTTTCCACCCATGGGATCACAAAGAGGATAGAAAAGAGGGAATGGTCCTATGGGTTCCACAAAGCATTGAAGAGCTTATAAGGGAGGCGATGAAACATTTGGGAATTCCAAACAGTTCCTATATTTTATCAGAACAAGGTGGCAAAATTCTTTATGTAGACATGATTAACAATAATGAGAAGCTATTTCTGGTGAGTGAAGCACAGAATGAGGTGAAGTTTTCCGGTCATCTAACTCCAACTGTCCAGGCACAACAGTAG 1272 0.386 MEQGDLVDQLYFVYHGELHEIRREDGDTEETITLNTYSSFGQVSFFCNMPQISTVKAREFCKVLRLDKKSFTEILKIYFLDGRIVLNNLLEVKDLNLQHKLLVSDFNLTIGNLETELATRMNCAAHDGHLDIVKHFIGFGADPNKTDYDGRTPLHISASKGYVDISSFLVEKGVNINSADKFGTTPLLEAIKNGHEEVASVLVNAGAILTIDDVGNFLCMTVAKKELDLLKRVLAYGINPNAKNYDQRTALHIAASEGLFTMVELLLEAGASVLSKDRWGNTPLHEAHTGGNRNMIKMLEVAKVSQLAELSNNIHGTQATPMLQSTDEIPRKRCIVFPFHPWDHKEDRKEGMVLWVPQSIEELIREAMKHLGIPNSSYILSEQGGKILYVDMINNNEKLFLVSEAQNEVKFSGHLTPTVQAQQ 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3521 423 Pfam KHA, dimerisation domain of potassium ion channel 332 401 IPR021789 -
Ssu5g3521 423 ProSiteProfiles Ankyrin repeat profile. 246 278 IPR002110 GO:0005515
Ssu5g3521 423 Gene3D - 213 312 IPR036770 -
Ssu5g3521 423 ProSiteProfiles Ankyrin repeat profile. 149 181 IPR002110 GO:0005515
Ssu5g3521 423 ProSiteProfiles Ankyrin repeat region circular profile. 182 213 - -
Ssu5g3521 423 SMART ANK_2a 279 308 IPR002110 GO:0005515
Ssu5g3521 423 SMART ANK_2a 182 211 IPR002110 GO:0005515
Ssu5g3521 423 SMART ANK_2a 116 145 IPR002110 GO:0005515
Ssu5g3521 423 SMART ANK_2a 213 242 IPR002110 GO:0005515
Ssu5g3521 423 SMART ANK_2a 149 178 IPR002110 GO:0005515
Ssu5g3521 423 SMART ANK_2a 246 275 IPR002110 GO:0005515
Ssu5g3521 423 PRINTS Ankyrin repeat signature 262 276 IPR002110 GO:0005515
Ssu5g3521 423 PRINTS Ankyrin repeat signature 150 165 IPR002110 GO:0005515
Ssu5g3521 423 PANTHER POTASSIUM CHANNEL SKOR 1 407 - -
Ssu5g3521 423 ProSiteProfiles cAMP/cGMP binding motif profile. 1 75 IPR000595 -
Ssu5g3521 423 SUPERFAMILY Ankyrin repeat 73 299 IPR036770 -
Ssu5g3521 423 Pfam Ankyrin repeats (3 copies) 224 299 IPR002110 GO:0005515
Ssu5g3521 423 Pfam Ankyrin repeats (3 copies) 122 211 IPR002110 GO:0005515
Ssu5g3521 423 ProSiteProfiles Ankyrin repeat profile. 182 214 IPR002110 GO:0005515
Ssu5g3521 423 ProSiteProfiles Ankyrin repeat region circular profile. 246 278 - -
Ssu5g3521 423 Gene3D Jelly Rolls 1 101 IPR014710 -
Ssu5g3521 423 SUPERFAMILY cAMP-binding domain-like 2 90 IPR018490 -
Ssu5g3521 423 CDD CAP_ED 2 86 IPR000595 -
Ssu5g3521 423 Gene3D - 112 212 IPR036770 -
Ssu5g3521 423 Pfam Cyclic nucleotide-binding domain 2 76 IPR000595 -
Ssu5g3521 423 ProSiteProfiles KHA domain profile. 333 419 IPR021789 -
Ssu5g3521 423 PANTHER POTASSIUM CHANNEL AKT1 1 407 IPR045319 GO:0005249|GO:0006813
Ssu5g3521 423 ProSiteProfiles Ankyrin repeat region circular profile. 149 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3521 Ssu-Chr5 86232197 86235509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3521 2 278 Ion Channels AT5G37500 49.667 5.85e-90 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3521 K21867 - gmx:100798698 691.804