Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3520 ATGCATGGCGGGGGCGGAGGAAGCAAGAGGAGGGAAGGAGGAGACAGCGATAATTTAGAGAAGGGATACGTGTCAAGGTTGAGGCATTGTTATGGTACACGCGGCGGAGATGCATGCCGCCAATTTGTGATTCGTCCTGATAATCGGTGGTACCTGGCgtggaagcatttcattctgGTATGGGCAGTGTACTCATCCTTCTTCACTCCGATGGAGTTCGGTTTCTTCCGAGGCTTGCCGGAGAAGATATTCCTCCTGGACATCGCGGGCCAATTCGCTTTCCTGGTGGACATCCTCCTCCGCTTCTTTGTGGGCTACCACGAGGTCCACTCCAACTCCGTGTCCTTGGTCCTAAGCCACTCCCAAATCGCCCTCAGGTACCTCAAGTCTCCTCGCTTCCTCCTCGACCTCCTCGGCTGTCTCCCCTGGGACTACATTTACAAAGTCGCTCGCCACAAAGAATTCCTCCGCTATCTACTTTGGACCAGGCTTAGCCGTGCCTTGAGAGTCACCGAGTTCTTCGACTCCCTCGAGAAGGACACCAGGGTGAATTACCTCTTCACCCGAATCGTCAAACTCTTCGTCGTTGAACTTTACTGCACCCACACCGCTGCCTGCATATTTTACTATCTCGCAACCACCATGCCCCCTTCCCACGAGGGTTACACCTGGATCGGTAGCTTGAAGATGGGTGACTATGCCTATTCTGACTTCAGACACATCGATCTCTGCAAGCGTTACATCACTTCCCTCTACTTCGCAGTTGTTACCATGGCCACTGTTGGCTACGGAGAAATCCACGCGGTCAATGTCAGGGAAATGATATTTGTCATGATTTATGTCTCTTTTGACATGATTCTCGGCGCTTACCTTCTTGGCAACATGACCGCGTTGATTGTCAAAGGATCTAAGACAGAGAGATTCAGAGATAAAATGTCTGATATTATGAAGTACATCGATAAAAACAACTTGGACAGGCAGATATCGAATCAAATTAAAGATCATTTGCGCTTAGAGTATGATCGCAGTTACGCCGGACCCTCTGTTCTTCAGGACATACCAACCACCATCCGCACAAAgATTTCAATCGGTTTATATGAGCATTTCATTGAGAAAGTTTCTCTTTTCAGGGATGCACTTCAGGGTTTATAA 1152 0.4826 MHGGGGGSKRREGGDSDNLEKGYVSRLRHCYGTRGGDACRQFVIRPDNRWYLAWKHFILVWAVYSSFFTPMEFGFFRGLPEKIFLLDIAGQFAFLVDILLRFFVGYHEVHSNSVSLVLSHSQIALRYLKSPRFLLDLLGCLPWDYIYKVARHKEFLRYLLWTRLSRALRVTEFFDSLEKDTRVNYLFTRIVKLFVVELYCTHTAACIFYYLATTMPPSHEGYTWIGSLKMGDYAYSDFRHIDLCKRYITSLYFAVVTMATVGYGEIHAVNVREMIFVMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMSDIMKYIDKNNLDRQISNQIKDHLRLEYDRSYAGPSVLQDIPTTIRTKISIGLYEHFIEKVSLFRDALQGL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3520 383 PANTHER POTASSIUM CHANNEL AKT1 47 379 IPR045319 GO:0005249|GO:0006813
Ssu5g3520 383 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g3520 383 PRINTS EAG/ELK/ERG potassium channel family signature 199 209 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g3520 383 PRINTS EAG/ELK/ERG potassium channel family signature 64 71 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g3520 383 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g3520 383 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g3520 383 PRINTS EAG/ELK/ERG potassium channel family signature 87 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g3520 383 PANTHER CHANNEL AKT1 PROTEIN, PUTATIVE-RELATED 47 379 - -
Ssu5g3520 383 Gene3D Helix hairpin bin 303 366 - -
Ssu5g3520 383 Gene3D - 52 301 - -
Ssu5g3520 383 Pfam Ion transport protein 53 300 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu5g3520 383 SUPERFAMILY Voltage-gated potassium channels 46 300 - -
Ssu5g3520 383 SUPERFAMILY cAMP-binding domain-like 303 378 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3520 Ssu-Chr5 86227686 86231169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3520 37 377 Ion Channels AT3G02850 68.915 3.57e-169 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3520 K21867 - gmx:100798698 539.265