Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3519 atggcTGTTGTCCGGGAGCGCCGCCACCTCAACCTCCGCCTCCCCCTCCCGGAGCCCTCGGAGCGCCGCCCCCGTTTCCCTCTCCCACTGCCCCCCTCCTCCTCCGCCAAGCCCGACGCCATCGCCCCCGCCGACATCGAAAAGCTCCACGTCCTCGGCCACGGCAACGGCGGTACCGTCTACAAAGTCCGGCACAAGCGAACCGCCGCGGAGTACGCCCTCAAGGTGGTTCACGGCGACTCCGACGCGGCCACCCGACGGCAGGTCCGCCGCGAGATGGACATCCTCCGCCGAACGGACTCCCCGCACGTGGTCCAGTACCACGGGTTCTTCGAGAAACCCTCCGGCGACGTGGCCATCCTCATGGAGTACATGGACGTGGGCACGCTCGACACGCTCCTCAAAATCAACGGCACCTTCTCGGAGCCCCAGCTCGCCACGGTGGCGCGTCAGGTGCTGAATGGAGTCAGCTACCTCCACGCGCACAAGATCATACACCGCGACATCAAGCCCTCCAACCTTCTCGTGAACCGGAACATGGAGGTTAAGATCGGGGATTTCGGCGTGAGCAAGGTCATGTGTCGCACTCTCGACGCCTGCAATTCCTACGTTGGAACCTGCGCCTATATGAGTCCGGAGCGCTTCGACCCGGATTCCTATGGCGGCAATTACAACGGCTATGCGGGTGATATTTGGAGCTTGGGCTTGACCCTCTTTGAGCTCTACGTGGGCCACTTTCCCTTCCTCCCCATGGGCCAGAGGCCCGACTGGGCCACGCTTATGTGCGCAATTTGCTTCGGGGACCCACCCACGTTGCCCGAGGGTGCTTCCGAAGAGTTTCGGAGCTTCATTGGGTGTTGTTTGATTAAGGAGTCGAGCCAGCGGTGGACGGCGTCGCAGCTCTTAACACACCCCTTTCTTCTTCGTACTTACACTTAG 939 0.6187 MAVVRERRHLNLRLPLPEPSERRPRFPLPLPPSSSAKPDAIAPADIEKLHVLGHGNGGTVYKVRHKRTAAEYALKVVHGDSDAATRRQVRREMDILRRTDSPHVVQYHGFFEKPSGDVAILMEYMDVGTLDTLLKINGTFSEPQLATVARQVLNGVSYLHAHKIIHRDIKPSNLLVNRNMEVKIGDFGVSKVMCRTLDACNSYVGTCAYMSPERFDPDSYGGNYNGYAGDIWSLGLTLFELYVGHFPFLPMGQRPDWATLMCAICFGDPPTLPEGASEEFRSFIGCCLIKESSQRWTASQLLTHPFLLRTYT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3519 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Ssu5g3519 312 MobiDBLite consensus disorder prediction 21 36 - -
Ssu5g3519 312 Pfam Protein kinase domain 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3519 312 Gene3D Transferase(Phosphotransferase) domain 1 128 312 - -
Ssu5g3519 312 CDD PKc_MAPKK_plant_like 44 307 - -
Ssu5g3519 312 Gene3D Phosphorylase Kinase; domain 1 31 126 - -
Ssu5g3519 312 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 308 - -
Ssu5g3519 312 ProSiteProfiles Protein kinase domain profile. 46 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3519 312 MobiDBLite consensus disorder prediction 15 39 - -
Ssu5g3519 312 SMART serkin_6 46 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3519 312 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Ssu5g3519 312 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 2 308 - -
Ssu5g3519 312 SUPERFAMILY Protein kinase-like (PK-like) 45 308 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3519 Ssu-Chr5 86195589 86196527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3519 1 307 MAP Kinase Kinase Gene Family AT1G73500 65.049 4.45e-139 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Ssu5g3519 Pkinase 1.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3519 K20604 - mnt:21402281 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3519 5 86195589 86196527 Ssu5g3519 5 86195589 86196527 ECH