Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3517 ATGAGCTCGCAAGAGCGAAACCAGCGGTCCAGGGTTCCTCGTCAGGAATGGATTCGTAGAGAATCCACCGATCAGAATCCTAATGGTGATGGTGCTGGTTCCTCCAATCCAACAAATCGGCATAGGAGGAATGGTCCTATTCCTAAGAATCATGTGCAGAAGAAGGGATTGAATTTGAGGGACTCTAATTTGCCTCAACTGCTGCAAGAGATTCAGGACAAGCTCGTGAAAGGTGCTGTTGAATGCATGATTTGCTATGAAATGGTGCGGAGGTCTGCGCCAATCTGGTCTTGCTCCAGTTGCTTCTCTATCTTTCACCTGAATTGCATAAAGAAGTGGGCACGTGCACCCACTTCCGTGGATTTGTCTGTTGAGAAGAATCAAGGGTTCAATTGGCGGTGCCCTGGTTGCCAGTCTGTGCAGCTCACATCATCCAAGGATATTAGATATGTATGCTTCTGTGGAAAGAGGCCAGAGCCGCCCTCGGATTTGTATCTCATGCCACATTCCTGTGGAGAACCATGTGGCAAGCCTCTTGAGAGGGAGCTCGGAGGGGATAAGGAGGTTCTTTGCCCCCATGTTTGTGTCTTGCAATGCCATCCCGGCCCGTGCCCTCCTTGCAAAGCATTTGCCCCTCCACGTTTGTGTCCTTGTGGGAAGAAAAATATCACCACTCGTTGCTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGTGAAAAGCTTCTTGAATGCGGGCGTCATCGGTGTGAGAGAATTTGTCATTTGGGTCCTTGTGATCCTTGTCAGGTTCCAATCCATGCCTCTTGCTTTTGCAGTAAAAAGATGCAGGTAATTCTTTGTGGCGACATGGCTGTGAAGGGTGAATTCAAAGCAGAAGGTGGAGTTTTTTCTTGTGGTTCCACTTGTGGAAAGAAACTTGGTTGTGGTAATCATATCTGTGTTGAGACTTGTCATCCAGGCAGCTGTGGGGAGTGTGAATTATTACCATCTCGTATTAAGACATGCTGTTGTGGGAAAACTAGATTGGAGGAGGAACGACAGAGTTGTTTAGACCCAATACCTACCTGTTCACAAGTATGTGGGAAGCCCCTTCCTTGTGGGATTCATCATTGTGAAGAGGCATGCCATGCTGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCCCAGAAGTGTCGATGTGGCTCGACTTCCCGAACTGTGGAGTGCTGTAAGACAAAAATGGAGAATGGGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATCGATGTAGTGAACGGTGTTGTCCACTTTCTAATCcaaataatattctaaatgCGGATTGGGATCCACACTTCTGTTCATTGCCATGTGGAAAGAAGTTAAGGTGTGGGCAGCATGCATGTGAATCCCTGTGCCATAGTGGTCATTGCCCACCTTGTCTTGAAACTATATTTACTGATCTGATATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCACCTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTTCCCATCCAGCCTCTCACAGCTGCCATTTTGGAGATTGCCCTCCATGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAGTTCTTAGGAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAAACTCTGTGGGAAGACCAGACAGTGCGGTTTACATGCATGTGGCAGAACATGTCACCTCCCACCTTGTGATAATCCATCTGCTGTGCCAGGTATTCGAGCCTCTTGTGGGCAAACATGTGGTGCTCCAAGGAGAGACTGCCGGCATACATGTGCAGCTCCTTGTCACCCTTCAACTCCATGTCCAGATACAAGGTGCAAATTCCCTGTCACAATTACTTGTTCTTGTGGCCGAATAACAGCAAATGTTCCTTGTGATGCTGGTGGCAGCTGTGCTAATTATAACGCTGATGCTGTACATGAAGCTTCCACTATTCAAAAGTTGCCTGTGCTGCTTCAACCCATGGCTGCAAATGGCAAACAAGTTCCCCTTGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAGCGTAAACGGGTTCTTGCAGATGCTTTTGAGATTACCACTCCAAATCTCGATTCTCTCCATTTTGGTGAGAATTCTGTTGCTTCTGAATTGCTTGCTGACATGTTGAGACGTGATCCTAAGTGGATTTTATCCGTTGAAGACAGATGCAAGTTTTTAGTGCTTGGCAAGAGCAGAGGAAATACACATGGTCTAAAGGTCCATGTTTTCTGTCCTATGTTGAAGGACAAAATAGATGCAGTGAGGGTGATTGCTGAGAGATGGAAGCTTGTAGTGAATGCAGCTGGTCGGGAGCCAAAGCGTTTTGTAGTTGTTCATGTAACCCCAAAATCAAGAGCTCCTGCTCGTGTGCTAGGGGTTAAGGGTACTACAACTGTAAATGCACCCCTTCCTTCTGCATTTGATCCTTTGGTAGATATGGATCCTCGACTTGTTGTCTCTTTTCTAGACTTACCAAGGGATGCAGATATTAGTGCGTTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTggttaaatgacaaaaatgcgTTGGCTGTTTTTAGTGACCCTGCCCGAGCTGCAACTGCAATGAGGAGGTTGAATCATGGTACTGTTTACCAGGGAGCTGTGGTGGTGGTTGTTCCGAATGTTGGGGCATTGGTAGTTTCTTCAGCTACCAATGCCTGGGGAGGATCTGGGACAATGAAAGGAGGAGGGGCACTGGCAGCATTAAAGGGTAATCCGTGGAAAAAGGATGTTATTCAAGAGGCAGGTTGGAGAGAAGATTCTTGGGGTGATGAAGTGTGGGCTACTGGTTCTGCTAATGTCCAGCTGCCTATTCAGAAGAAAGAAGCCCTAATATCTTCTTCAGTAAATCCTTGGAGTGTCTTAAATCAAGAATCATCTTCAAGTTCATCTGTTGCAGCTGTTAAAATTGACGTTTCTAGGAAACACTCTGAAAATAGTGCTGTCACAAAGTTGGAGCCTCATGATGGTGGTTCAAATCTAGGAGGGCAGCATGCAGGAAACTTTGATGCATTAGAAGTTTCTGATGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG 3180 0.4594 MSSQERNQRSRVPRQEWIRRESTDQNPNGDGAGSSNPTNRHRRNGPIPKNHVQKKGLNLRDSNLPQLLQEIQDKLVKGAVECMICYEMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDLSVEKNQGFNWRCPGCQSVQLTSSKDIRYVCFCGKRPEPPSDLYLMPHSCGEPCGKPLERELGGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQRCEKLLECGRHRCERICHLGPCDPCQVPIHASCFCSKKMQVILCGDMAVKGEFKAEGGVFSCGSTCGKKLGCGNHICVETCHPGSCGECELLPSRIKTCCCGKTRLEEERQSCLDPIPTCSQVCGKPLPCGIHHCEEACHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKMENGKFTCEKPCGQKKNCGRHRCSERCCPLSNPNNILNADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLICACGKTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSAVPGIRASCGQTCGAPRRDCRHTCAAPCHPSTPCPDTRCKFPVTITCSCGRITANVPCDAGGSCANYNADAVHEASTIQKLPVLLQPMAANGKQVPLGQRKLMCNDDCAKLERKRVLADAFEITTPNLDSLHFGENSVASELLADMLRRDPKWILSVEDRCKFLVLGKSRGNTHGLKVHVFCPMLKDKIDAVRVIAERWKLVVNAAGREPKRFVVVHVTPKSRAPARVLGVKGTTTVNAPLPSAFDPLVDMDPRLVVSFLDLPRDADISALVLRFGGECELVWLNDKNALAVFSDPARAATAMRRLNHGTVYQGAVVVVVPNVGALVVSSATNAWGGSGTMKGGGALAALKGNPWKKDVIQEAGWREDSWGDEVWATGSANVQLPIQKKEALISSSVNPWSVLNQESSSSSSVAAVKIDVSRKHSENSAVTKLEPHDGGSNLGGQHAGNFDALEVSDVVDDWEKACE 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3517 1059 CDD NF-X1-zinc-finger 171 229 - -
Ssu5g3517 1059 CDD RING-CH-C4HC3_NFX1 81 138 - -
Ssu5g3517 1059 SUPERFAMILY RING/U-box 73 141 - -
Ssu5g3517 1059 MobiDBLite consensus disorder prediction 9 23 - -
Ssu5g3517 1059 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 2 1056 - -
Ssu5g3517 1059 Pfam NF-X1 type zinc finger 426 437 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 Pfam NF-X1 type zinc finger 310 327 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 Pfam NF-X1 type zinc finger 574 589 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 Pfam NF-X1 type zinc finger 368 385 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 Pfam NF-X1 type zinc finger 605 631 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 Pfam NF-X1 type zinc finger 464 481 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 Pfam NF-X1 type zinc finger 528 538 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 Pfam NF-X1 type zinc finger 246 264 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 Pfam NF-X1 type zinc finger 193 208 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 ProSiteProfiles Zinc finger PHD-type profile. 79 140 IPR019787 -
Ssu5g3517 1059 CDD NF-X1-zinc-finger 236 284 - -
Ssu5g3517 1059 SMART znfxneu3 246 265 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 SMART znfxneu3 574 603 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 SMART znfxneu3 521 539 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 SMART znfxneu3 310 329 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 SMART znfxneu3 368 387 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 SMART znfxneu3 612 633 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 SMART znfxneu3 191 209 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 SMART znfxneu3 426 456 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 SMART znfxneu3 464 483 IPR000967 GO:0005634|GO:0008270
Ssu5g3517 1059 MobiDBLite consensus disorder prediction 1017 1040 - -
Ssu5g3517 1059 MobiDBLite consensus disorder prediction 24 43 - -
Ssu5g3517 1059 CDD NF-X1-zinc-finger 300 345 - -
Ssu5g3517 1059 CDD NF-X1-zinc-finger 454 497 - -
Ssu5g3517 1059 CDD NF-X1-zinc-finger 358 406 - -
Ssu5g3517 1059 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 2 1056 IPR034078 GO:0003700
Ssu5g3517 1059 CDD NF-X1-zinc-finger 511 559 - -
Ssu5g3517 1059 MobiDBLite consensus disorder prediction 1 58 - -
Ssu5g3517 1059 CDD NF-X1-zinc-finger 601 650 - -
Ssu5g3517 1059 ProSiteProfiles Zinc finger RING-type profile. 82 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3517 Ssu-Chr5 86168464 86171643 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Ssu5g3517 zf-NF-X1 1.4e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3517 K12236 - gmx:106799700 1991.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3517 5 86168464 86171643 Ssu5g3517 5 86168464 86171643 ECH