Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3514 ATGCTGCCTCACAAGCACACTCTCGTGGTTGTGGCGGCCGCACTGACGCTGATCCTGGCCGCCGCAGAAGCAGATCTGGCGTCCGAGCGAGCCGCATTGCTGGCTCTCCGTTCTGCCGTGGGCGGCAGAACTCTCTTCTGGAACGCGACGAGGGAGAGCCCCTGCGACTGGGCGGGGGTCCAATGCGAGCACGACCACGTGGTGGAGCTGCACCTCCCGGGCGTGGCTCTCTCGGGCCGAATCCCCATGGGAATATTCGGGAATCTGACCCAGCTACGCACCCTGAGTCTCCGTTTCAACGCGCTGAGGGGTCCCCTCCCTTCAGATCTGGCCTCCTGCGTTAACCTCCGCAACCTGTACTTACAGCGGAACTTGCTCAGCGGCGAAATCCCAGAGTTTTTGTTTAAGTTACCGGACCTGGTTCGCGTGAACATGGGCTTCAACAACTTCTCGGGCCCGTTTCCGAGCGCGTTCAACGAGCTGACCCGGTTGAAGACCCTGTTTCTGGAAAACAACCAGCTCTCGGGCCCAATCCCGGAGATGGAGAAACTCAGCCTGGACCAGTTCAACGTCTCCAACAACTTCCTCAACGGCTCTGTCCCTCTTAAGCTTCAGACATTCCCTCAGGATTCTTTTCTAGGGAACTCCCTCTGTGGCCGACCCCTCTCTCTCTGTCCCGGGGATGTCGCCGATCCTATCTCCGTCGACAACAACAACGGCAAGAACAACAATACCAAGAACAAAAAGTTGTCTGGTGGCGCCATTGCGGGAATAGTTGTCGGATCGGTGGTGTGTCTTCTGCTGCTGGTGTTCCTCTTGATCTTCCTGTGCAGGAGCAAGAGTGGGAAGAAGACCAGCGCGGTCGACATTGCTACCGTCAAACATCCTGAGACGGAGTCCGAGGTTCTTGCTGAGAAGGGTGTCTCCGATGTGGAGAACGGGGGTCATGCCAATGGGAACTCTGCGGCGGCTGCGGTTGCGGTTGCGGCTGCGGCGGGGGGGAACAAGGCGGAAGGGAACGGGGGTGGGGGAGCGAAGAAGTTGGTGTTTTTCGGGAATGCGGCGAGGGCGTTTGATCTGGAGGATTTGCTTAGGGCTTCGGCGGAGGTATTGGGGAAGGGGACGTTCGGGACGGCGTATAAGGCGGTTCTGGAGGCGGGGCCGGTGGTGGCGGTGAAGAGGTTGAAGGATGTGACGATTTCGGAGAAGGAGTTTAAGGAGAAGATTGAGGCGGTGGGAGCGATGGATCACGAGAGTTTGGTCCCTCTCAGGGCTTACTATTTCAGCAGGGACGAGAAGCTCCTTGTTTATGATTACATGCCCATGGGAAGCTTGTCTGCACTTTTGCATGGAAACAAAGGGGCGGGTAGGACACCACTGAATTGGGAAGTTAGATCAGGCATTGCACTTGGAGCTGCCCGTGGAATTGAGTACCTACATTCACGAGGGCCTAATGTTTCTCATGGAAATATAAAGTCATCTAACATCCTCTTAACCAAATCATATGATGCCAGAGTATCTGACTTTGGCCTTGCACACCTTGTTGGCCCCTCCTCTACCCCCAACCGTGTTGCCGGCTACCGTGCACCCGAGGTGACTGATCCTCGCAAGGTATCTCAGAAGGCAGATGTGTACAGTTTTGGTGTATTACTCTTGGAACTTCTGACTGGGAAGGCACCTGCCCATGCTCTCCTGAATGAGGAAGGAGTAGACCTCCCCAGATGGGTTCAATCCGTGGTTAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTCCTTAGGTATCAGAATGTGGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCACAATACCCTGACAAACGCCCTTCAATGTCTGAAGTGGTAAGGAGCATACAAGAGTTGCGAAGGTCTAGCTTGAAAGAGGACCAGGACCAAATCCAACATGATCCCACCAATGATATAGAATTATAG 1971 0.5485 MLPHKHTLVVVAAALTLILAAAEADLASERAALLALRSAVGGRTLFWNATRESPCDWAGVQCEHDHVVELHLPGVALSGRIPMGIFGNLTQLRTLSLRFNALRGPLPSDLASCVNLRNLYLQRNLLSGEIPEFLFKLPDLVRVNMGFNNFSGPFPSAFNELTRLKTLFLENNQLSGPIPEMEKLSLDQFNVSNNFLNGSVPLKLQTFPQDSFLGNSLCGRPLSLCPGDVADPISVDNNNGKNNNTKNKKLSGGAIAGIVVGSVVCLLLLVFLLIFLCRSKSGKKTSAVDIATVKHPETESEVLAEKGVSDVENGGHANGNSAAAAVAVAAAAGGNKAEGNGGGGAKKLVFFGNAARAFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFKEKIEAVGAMDHESLVPLRAYYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEVRSGIALGAARGIEYLHSRGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVVRSIQELRRSSLKEDQDQIQHDPTNDIEL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3514 656 MobiDBLite consensus disorder prediction 635 656 - -
Ssu5g3514 656 Gene3D Phosphorylase Kinase; domain 1 338 439 - -
Ssu5g3514 656 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Ssu5g3514 656 PANTHER OS05G0588300 PROTEIN 4 654 - -
Ssu5g3514 656 Gene3D Ribonuclease Inhibitor 28 137 IPR032675 -
Ssu5g3514 656 Pfam Protein kinase domain 368 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3514 656 SUPERFAMILY L domain-like 47 204 - -
Ssu5g3514 656 Gene3D Transferase(Phosphotransferase) domain 1 440 654 - -
Ssu5g3514 656 Gene3D Ribonuclease Inhibitor 139 225 IPR032675 -
Ssu5g3514 656 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 654 - -
Ssu5g3514 656 ProSiteProfiles Protein kinase domain profile. 365 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3514 656 CDD STKc_IRAK 371 634 - -
Ssu5g3514 656 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524
Ssu5g3514 656 SUPERFAMILY Protein kinase-like (PK-like) 369 635 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3514 Ssu-Chr5 86096952 86099323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3514 25 635 Receptor kinase-like Gene Family AT1G48480 65.539 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu5g3514 Pkinase 2.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3514 - - gmx:100818955 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3514 5 86096952 86099323 Ssu5g3514 5 86096952 86099323 ECH