Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3511 ATGGCGAGGCCAGACAGGACAGGTAGAAATAAAAGCCTAGAGACTCTAATGGACTCAGACAAACCAGGAATTGGAAGAAATGTGAACCAACTGAGGCCCCAGAAGTCCATTCCTGGCTATGGCCTAGAATTCAATAACCTCTCgtataatatcataaaagagCAGAAAAAGGATGGAGTTTGGATCAACAAAGAAACATATCTTCTTCATGATATCTCAGGCCAGGCAGTAAAAGGTGAAATCATGGCAATCATGGGGCCTAGTGGTGCTGGCAAATCCACATTTCTTGATGCCTTGGCTGGGCGAATTGCAAAAGGGAGTCTAGAAGGATCAGTTAGAATTGATGGAAAACCAGTTACTACAAGCTACATGAAAATGGTGTCATCATATGTGATGCAAGATGACCAGCTCTTCCCTACGTTGACAGTTTTGGAAACATTTATGTTTGCAGCTGAAGTTAGGCTTCCTCCTTCCATTTCCAGGgatgaaaagaagaagagggtTTATGAGCTCCTTGACAAACTGGGCTTACAGAGTGCTACACATACCTATATTGGTGATGAAGGAAGGAGAGGAGTGTCAGGAGGGGAACGACGAAGGGTATCTATTGGCATAGACATCATCCATAAGCCATCACTTCTGTTTCTTGACGAACCTACCTCAGGCCTTGATTCTACAAGTGCTTACAGTGTTGTAGAAAAGGTTAAAGACATAGCTCGAGGTGGAAGCATTGTCCTTATGACCATACACCAGCCTTCATTTAGAATTCAAATGCTCCTGGACCAGATCACCGTCCTTGCAAGGGGAAGACTGATATACATGGGAAGGCCAGATGCAGTTCAGGCTCACATGTCAGCATTTGGAAGGCCTGTACCTGATGGAGAAAACAGCATAGAGTATCTCCTAGATGTTATAAGTGAATTTGATCAAGCAACGGTTGGGCTTGATCCCCTTGTCCAATTCCAACGTGATGGCCTCAAACCTGAACCAGCAGCCATGACGCCTGTTCCAAAAACTCCAAGAACACCTTACAGAAGCAACACCCCTGCATCTAAACACATGATTAGCCTACGCAGCCAAGGATTTACTGCTGGAACACAACAACCTGATTCTGCACAGTTTAGTTATCATGATGAGGACGACGATGATGAGAATTTTGATAACTCCCTTGAAAGGAAAAGTGTTCAAACACCAAGGAATATGACTAGTGGTGTTTACCCACGTTTGGCTTCTCAGTTTTACAAAGATTTCTCAGCCAAAGATTTCTCTGTCTGGCTTTACAATGGTGTAGTAGGAACCCCGCGTCGCCAACCATCATGGACTCCAGCAAGAACTCCAGGATGGACACCTGGGAAGACACCCATGTCAGGACCTAGAAGTGTAGTTTCCAGCCAATATTCTCAGGATCCTTATTGCCCCAAAACTCCTGCAGTGGTTGGCCAGTCTATGGACTACTCAGCAACTTCATATGCACCTTCATATGAAGGATTTGAGATTGAGGAAGTAGTGCTTGATGAGCCAAACTTCGGATCCAAGTATGCAAACCCATGGTTGCGTGAGGTTGCAGTGCTCTCATGGCGAACAGCACTCAATGTAATTCGCACCCCAGAACTCTTCCTCTCCCGTGAGATTGTGTTAACTGTTATGGCACTTATCCTGTCCACCATTTTTGGAAATCTGAGTGATACTTCTTTCAAAGACATCAACAGGCTCCTCAATTTCTACATCTTTGCAGTGTgccttgttttcttttcttccaatgATGCAGTCCCATCTTTTATCATGGAAAGGTTCATCTTCATCAGGGAAACTTCCCATAATGCTTACCGTGCTTCTTCATATGTAATTTCTTCCCTCATTGTTTACCTCCCATTTTTCGCTGTTCAAGGCCTCACTTTTGCTGCCATAACCAAATTTATGCTCCACTTGAAAAGCAGTCTCTTGTATTTCTGGCTAATACTTTATGCCTCACTTATTACTACCAATGCATATGTGATGCTTGTTAGTGCACTTGTGCCTAGTTACATCACAGGGTATGCAGTAGTCATAGCCACAACAGCACTCTTCTTTTTGACCTGTGGTTTCTTCCTCAAGCGCACTAAGATACCCATTTACTGGCAGTGGCTCCACTATATTTCTGCAATCAAATATCCATTTGAGGCATTGCTGACAAATGAATTCAAGAACAACCGCGGATGCTACACAGGAAACCCAGCAGAATTATCCCCCGGACCATTAGGAGATGTGAAGTACAGCAAACATCGTAACACCAGTCTGCCCACTAGCTGCTTATTAGGGGAAGATATCTTGTCCACAATGGATATTACAATGGAAAACGTATGGTATGACATCTTAATCCTGCTAGCCTGGGGTGTTCTTTACAGGTTGTTCTTCTATTTGGTGTTGAGATTTTACTccaagaatgagagaaaatga 2436 0.4253 MARPDRTGRNKSLETLMDSDKPGIGRNVNQLRPQKSIPGYGLEFNNLSYNIIKEQKKDGVWINKETYLLHDISGQAVKGEIMAIMGPSGAGKSTFLDALAGRIAKGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPTLTVLETFMFAAEVRLPPSISRDEKKKRVYELLDKLGLQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIVLMTIHQPSFRIQMLLDQITVLARGRLIYMGRPDAVQAHMSAFGRPVPDGENSIEYLLDVISEFDQATVGLDPLVQFQRDGLKPEPAAMTPVPKTPRTPYRSNTPASKHMISLRSQGFTAGTQQPDSAQFSYHDEDDDDENFDNSLERKSVQTPRNMTSGVYPRLASQFYKDFSAKDFSVWLYNGVVGTPRRQPSWTPARTPGWTPGKTPMSGPRSVVSSQYSQDPYCPKTPAVVGQSMDYSATSYAPSYEGFEIEEVVLDEPNFGSKYANPWLREVAVLSWRTALNVIRTPELFLSREIVLTVMALILSTIFGNLSDTSFKDINRLLNFYIFAVCLVFFSSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAAITKFMLHLKSSLLYFWLILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTKIPIYWQWLHYISAIKYPFEALLTNEFKNNRGCYTGNPAELSPGPLGDVKYSKHRNTSLPTSCLLGEDILSTMDITMENVWYDILILLAWGVLYRLFFYLVLRFYSKNERK 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3511 811 Gene3D - 42 288 IPR027417 -
Ssu5g3511 811 SMART AAA_5 78 278 IPR003593 -
Ssu5g3511 811 MobiDBLite consensus disorder prediction 327 349 - -
Ssu5g3511 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 286 IPR027417 -
Ssu5g3511 811 MobiDBLite consensus disorder prediction 363 395 - -
Ssu5g3511 811 MobiDBLite consensus disorder prediction 1 16 - -
Ssu5g3511 811 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 805 - -
Ssu5g3511 811 MobiDBLite consensus disorder prediction 1 28 - -
Ssu5g3511 811 CDD ABCG_EPDR 42 275 - -
Ssu5g3511 811 MobiDBLite consensus disorder prediction 437 466 - -
Ssu5g3511 811 Pfam ABC-2 type transporter 521 727 IPR013525 GO:0016020|GO:0140359
Ssu5g3511 811 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 293 IPR003439 GO:0005524
Ssu5g3511 811 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524
Ssu5g3511 811 Pfam ABC transporter 69 221 IPR003439 GO:0005524
Ssu5g3511 811 PANTHER ABC TRANSPORTER 3 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3511 Ssu-Chr5 86055332 86058446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3511 68 289 Calmodulin-binding Proteins AT2G36910 26.957 1.61e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3511 K05681 - gmx:100819497 1431