Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3506 ATGTCTTCTCTCCTGGTCCTGGATGAGTGCAGGGAACACTTGTTGGAGGTGGACGGCTACACCAATGGAAGTGAGAGGGACAACGCCAAACCCAAATTCCAGATAAGGAATCTGACCAGAGTTTCCGACGATGGGGTTCCCATCCTCAAAGGCATCAACGTTGACATCCCAAAGGGTGTCATCGTGGGAGTCATAGGCCCCAGCGGAAGCGGCAAGTCAACGCTCTTGAGGGCCCTCAACCGCCTCTGGGAACCGCCTTCCGCCTCCGTCTTCCTCGACGGCCAAGACATCTCCGATCTCGACGTTCTCTCTCTCCGCCGTAACGTTGGCATGCTCTTTCAGCTCCCTGCCCTCTTTGAAGGCACAGTTGCAGACAACGTGAGGTATGGACCACAACTTAGAGGAAAAAAGCTAACCGATGATGAGGTGCGCAAGTTGCTGATAATGGCGGACCTAGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTGGGTCAAGCTCAAAGAGTTGCACTTGCCAGGACTTTAGCTAATTCACCAGaggTTTTGTTGCTGGATGAGCCAACTAGTGCGTTAGATCCAATATCCACAGAAAACATAGAGGATGCGCTGATGAAGCTCAACAAGAATCGGGGCATGACAGTGATCATGGTCTCTCATAGCATCAAACAAATCCAAAGGATCGCTGACATAGTGTGCCTGCTTGTTGATGGGGAAATTGTTGAAGTTCTGAAGCCTGATAAACTCTCTGAAGCCAAACATCACATGGCACAGAGGTTTCTTGAACTCAGTTCTTAG 804 0.5025 MSSLLVLDECREHLLEVDGYTNGSERDNAKPKFQIRNLTRVSDDGVPILKGINVDIPKGVIVGVIGPSGSGKSTLLRALNRLWEPPSASVFLDGQDISDLDVLSLRRNVGMLFQLPALFEGTVADNVRYGPQLRGKKLTDDEVRKLLIMADLDASFMDKSGAELSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEDALMKLNKNRGMTVIMVSHSIKQIQRIADIVCLLVDGEIVEVLKPDKLSEAKHHMAQRFLELSS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3506 267 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 10 267 IPR005670 GO:0005315|GO:0016020|GO:0035435
Ssu5g3506 267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 264 IPR003439 GO:0005524
Ssu5g3506 267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 256 IPR027417 -
Ssu5g3506 267 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 10 267 - -
Ssu5g3506 267 CDD ABC_PstB_phosphate_transporter 33 251 IPR005670 GO:0005315|GO:0016020|GO:0035435
Ssu5g3506 267 Pfam ABC transporter 49 192 IPR003439 GO:0005524
Ssu5g3506 267 Gene3D - 31 267 IPR027417 -
Ssu5g3506 267 SMART AAA_5 58 241 IPR003593 -
Ssu5g3506 267 ProSitePatterns ABC transporters family signature. 164 178 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3506 Ssu-Chr5 85985912 85987068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3506 22 251 Calmodulin-binding Proteins AT2G36910 33.197 2.96e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3506 K02068 - gmx:100791365 410.994