Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3498 ATGTGCTTGAGGTGGCAAGTCCTTTTAGCAGGCTCTTCCTCACCTATAAATTGCTTAGGGTTAGAGGGAAGAGACGAAAGAATGGTAAAATCAACATATGACAGATTTTCAAAGGATTTTGTAATGGGGGGAGTAGCAGCAATCATATCAAAGAGTGCAGCGGCACCAATTGAGAGAGTGAAGCTTTTATTGCAAAACCAAGGTGAAATGATCAAAAGAGGACAACTCAAAAAACCATACTTGGGTGTGTCTGATGGCTTTAACAGGGTCTTCATGGAAGAGGGTTTGATTGCCTTTTGGAGAGGTCACCAGGCCAATGTTATCCGATATTTCCCCACACAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATTTTTGGGTATTCCAAAGACAGAGACGGGTACATTATGTGGTTTGCTGGGAATGTGGCTTCAGGCAGTGCTGCAGGAGCAACTACTTCACTGCTTCTGTATCATTTAGATTATGCACGTACACGATTGGGCACCGATGCAATAGAGTGCCATGTTACTGGTCAACGCCAGTTTAGAGGACTAATTGATGTATACCGGAAGACCTTATCAAGTGATGGAATTGCTGGATTGTACAGGGGATTTGGGATTTCAATATGGGGAATCACCATGTATCGAGGGATGTACTTTGGGATCTATGACACCATGAAGCCTATTGTTTTAGCTGGGCCTTTTGAGGGGAAATTTCTTGCTAGTTTCTTATTAGGTTGGAGCATCACAACATTTTCAGGGGTTTGTGCATACCCTTTTGACACATTGCGCCGGCGAATGATGCTTACCTCTGGACATCCAAACAAGTACTGTAGTGCAGTACATGCATTTCGTGAGATTGTTCGACAAGAGGGTTTCTTAGCTCTATTTCGAGGAGTTACTGCAAATATGCTTCTTGGTATGGCAGGAGCTGGGGTGCTCGCTGGATACGATCAGCTGAACCATATCTCATCTATACACAGTCACCATAATGATACAAATCAAGGAGTTTTGAAATGA 1026 0.4298 MCLRWQVLLAGSSSPINCLGLEGRDERMVKSTYDRFSKDFVMGGVAAIISKSAAAPIERVKLLLQNQGEMIKRGQLKKPYLGVSDGFNRVFMEEGLIAFWRGHQANVIRYFPTQAFNFAFKGYFKSIFGYSKDRDGYIMWFAGNVASGSAAGATTSLLLYHLDYARTRLGTDAIECHVTGQRQFRGLIDVYRKTLSSDGIAGLYRGFGISIWGITMYRGMYFGIYDTMKPIVLAGPFEGKFLASFLLGWSITTFSGVCAYPFDTLRRRMMLTSGHPNKYCSAVHAFREIVRQEGFLALFRGVTANMLLGMAGAGVLAGYDQLNHISSIHSHHNDTNQGVLK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3498 341 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 31 337 - -
Ssu5g3498 341 SUPERFAMILY Mitochondrial carrier 35 322 IPR023395 -
Ssu5g3498 341 Gene3D Mitochondrial carrier domain 37 329 IPR023395 -
Ssu5g3498 341 Pfam Mitochondrial carrier protein 36 129 IPR018108 -
Ssu5g3498 341 Pfam Mitochondrial carrier protein 140 231 IPR018108 -
Ssu5g3498 341 Pfam Mitochondrial carrier protein 240 324 IPR018108 -
Ssu5g3498 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 239 325 IPR018108 -
Ssu5g3498 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 139 231 IPR018108 -
Ssu5g3498 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 34 127 IPR018108 -
Ssu5g3498 341 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 31 337 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Ssu5g3498 341 PRINTS Mitochondrial carrier protein signature 102 122 IPR002067 GO:0055085
Ssu5g3498 341 PRINTS Mitochondrial carrier protein signature 154 172 IPR002067 GO:0055085
Ssu5g3498 341 PRINTS Mitochondrial carrier protein signature 39 52 IPR002067 GO:0055085
Ssu5g3498 341 PRINTS Mitochondrial carrier protein signature 248 270 IPR002067 GO:0055085
Ssu5g3498 341 PRINTS Mitochondrial carrier protein signature 52 66 IPR002067 GO:0055085
Ssu5g3498 341 PRINTS Mitochondrial carrier protein signature 204 222 IPR002067 GO:0055085
Ssu5g3498 341 PRINTS Adenine nucleotide translocator signature 113 125 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Ssu5g3498 341 PRINTS Adenine nucleotide translocator signature 244 260 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Ssu5g3498 341 PRINTS Adenine nucleotide translocator signature 36 48 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Ssu5g3498 341 PRINTS Adenine nucleotide translocator signature 80 101 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Ssu5g3498 341 PRINTS Adenine nucleotide translocator signature 139 152 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3498 Ssu-Chr5 85875591 85883158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3498 34 329 Antiporters AT5G17400 76.689 3.63e-164 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3498 K05863 - gmx:100798418 563.533