Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3494 ATGTGGATGGTTGGTTACAATGAAGGTGGTGAGTTCAACATGGCTGATTATGCATTCAATGGAAGGAAACTCAGGCCCCTCATGCCAAGGCCAGTGACTTCTCCTAACAACACTTCAACCACAAACTCTCCATGCTTGAGCCGCATTCATCATGGCAACGATTTCTTTTCACAATATCACAATCTGGCATCAGTGGCAGACCAGGGAAAGAGAGAGTTCAACCCTCCACCAGTAGTGGTGAGTTCAAGGTGGAATCCAACCCCGGAGCAGCTAAGAGCATTGGAGGAATTGTATAGAAGAGGAACAAGAACACCATCCGCGGAGCAAATCCAGCAAATCACGGCACAGCTTAGAAGGTTTGGAAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCAAGAGAAAGACAGAAACGCCGCCGTCAAATGGAGTCAGCAGCTGAGGGTCATCACACCCGTGACTTTGATAGTACTCTTGAAAAGAAAGACTTAGGAGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAATACAAAGGGCAGCAAAAGCAGCTATTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAACATAGAAGAAACTTTTTGGAGAGGAATGCCACGTGGCATATGATGCAATTATCTTGTCCTCCCCCTCCTACAGTTTCACCCCACCTAATAAACACACCTCCTACTACCTCTACAACTAGCATGGCCACCACAGCCACAGTAACAGCAAGAGTAATGGACCCAAACCTCATTAAGACTCATGATCTCAGCTTCTTTATTTCACCTAACAGAGAAAACGGTACTATCCACTTAAGCAGTATCAGCACCGACGATGATAATTGTGTGGAATCTCAAACCCTTCAACTTTTCCCAATAAGGAACGGGGATGAAAGCAGTGATAACATTAACCAGCAAAAAGAGACAGAGGTATCAGTTTCAGCAATGAATGCGCCCAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACtga 1080 0.4463 MWMVGYNEGGEFNMADYAFNGRKLRPLMPRPVTSPNNTSTTNSPCLSRIHHGNDFFSQYHNLASVADQGKREFNPPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHTRDFDSTLEKKDLGASRTVFEVEQTKNWAPSTNCSTLAEESVSIQRAAKAAIAECRTDGWLQFDEGELQHRRNFLERNATWHMMQLSCPPPPTVSPHLINTPPTTSTTSMATTATVTARVMDPNLIKTHDLSFFISPNRENGTIHLSSISTDDDNCVESQTLQLFPIRNGDESSDNINQQKETEVSVSAMNAPSQFFEFLPLKN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3494 359 PANTHER WUSCHEL, PUTATIVE-RELATED 279 359 - -
Ssu5g3494 359 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Ssu5g3494 359 SMART HOX_1 79 146 IPR001356 GO:0003677
Ssu5g3494 359 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 11 256 IPR044555 GO:0003700|GO:0099402
Ssu5g3494 359 CDD homeodomain 83 143 IPR001356 GO:0003677
Ssu5g3494 359 MobiDBLite consensus disorder prediction 143 160 - -
Ssu5g3494 359 MobiDBLite consensus disorder prediction 140 160 - -
Ssu5g3494 359 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Ssu5g3494 359 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Ssu5g3494 359 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 279 359 IPR044555 GO:0003700|GO:0099402
Ssu5g3494 359 PANTHER WUSCHEL, PUTATIVE-RELATED 11 256 - -
Ssu5g3494 359 Gene3D - 80 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3494 Ssu-Chr5 85848508 85850593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3494 1 359 Wox Gene Family AT3G18010 41.071 1.67e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu5g3494 Homeodomain 9.7e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3494 5 85848508 85850593 Ssu5g3494 5 85848508 85850593 ECH