Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3487 ATGGCTTCAAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGACGAGGAGGTTGAAACCACCGTGGGTGAATCTGCTAGTCAAGCAGTGACAAGCAGGTACCTGCAGGACAATGCAAGTGACAGTGATGACTCCGATGGCCAAAAGCGCGTTGTGCGGTCAGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAACGACTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGTGTCACCGAGTCTGAGAAGGTCCCCAATCTTTACATCAAGGCACTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTGAAGAAGAATGATAAGCAGTATGAGGACTTGATCAATAAGTGCCGGGAGAACCCTGAGAGCGAGGGGgaaaaagaagaggaggagAGTGAGGAAGAGTACGAGAGTGATGATGAGATTATCGAGCCGGAGCAGCTTCGAAAACCAGAAGCAAAATCTGATTCGGAAGCCTCTCAATATGAAGATGAAAAGCCAGATGCTGGTGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGATAGACAGTTCATGAAAGACCCTAGTGAGATCAAGTGGGACACGGTTAACAAAAAGTTTAAAGAGGTTGTGGCTGCTAGGGGCAGGAAGGGAACTGGGAGGTTTGAACAGGTTGAGCAGCTCACTTTCTTAACAAAAGTTGCTAAGACACCTGCACAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCGGGCCTCAATGGCCATATGCCCATAAATGTATGGAAAAAATGTTTGCAGAACATGCTGATCATTCTTGATATTCTAGTGCAGTACCCAAACATAGTGGTTGATGATTCGGTGGAACCACATGAGAATGAATCTCAGAAAGGTCCTGAATATAATGGACCAATTCGGGTTTGGGGTAACTTGGTTGCTTTCTTAGAAAGAATTGATGTTGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACACGTGACTATGTTGAGAGACTTATGGATGAGCCCATGTTTCTGGTTCTTGCCCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCTGCTTCTAAAGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAGGAGGTTTATGATGCTATGAAAAAATTGACTGAGTTGACAGAAAATGGAGATAATGGAGGGGAGGCAAGTGAGGAGTCAAAAGGATTTGAGGAATCAAGAATTCCTACTGCATTTGTTGTTACCCCAGAGGTTGTGGCCCGAAAACCCACCTTCCCTGAGAATAGCAGGACGCTAATGGATGTATTGGTATCTTCGATATATAAATGTGGAGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATATAACCATGCTCTTCTTGACGAGTTCTCAGTAGCCCGTGATCTGCTGCTTATGAGCCATTTGCAAGATAGTGTTCAGCATATGGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGAATTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTCTACTCTGGTGGAAGGGTGAAAGAGTTGCTTGCCCAAGGTGTGTCACAAAGTCGTTATCACGAGAAGACTCCAGAACAGGAAAGATTGGAAAGAAGACGGCAGATGCCGTATCATATGCACATCAATCTTGAGCTCCTGGAGGCAGTGCATCTTGTATCTGCTATGCTGCTGGAAGTTCCCAATATGGCAGCCAATGTTCATGATTCAAAACGCAAGGTCATTAGTAAGACTTTCCGTCGCTTGCTTGAGGTCAGCGACAAACAAACTTTCACTGGTCCACCGGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGGTTCTTAGCAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTatggaaatttgtgagaaatcGAGACACCGTGCTTGAAATGCTCAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGAATCCTTGGGCCTGGATCAGCTCGCAAAAATTTTTGATCTCTCTGTTTCTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCACGCAAGCTGGGACCAGCCAACTGGGTGCATTCTTTTCCAAGATGTTGAACACTCTAGGCTGCAGGCATTGGCTTTCCAGTTGACAGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCAACAGAGGCAAGGGTAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGACGAGATAGCCAGGACTATGCAGCCGCTGCTGCTGCCGGTAGTGGAACAGCCTCTTCAGGTGGTAGGTGGCAAGACCTGTCCCTTTCTCAGCCAAGGCAAAGCAGTGGGCGTGCAGGGTATCGTAGCGGTGGTGGAAGGCCAATGGCATTAGGCCAAGCAGCTGGGAGTGGCTACTCAAGGGATCGAATGGGACGAGGAACAGGCGCTGGCTATCATGGTGCACGATATCAAGATGCTTCATATGGAGGTTCAGGGAGGACTGCTCAAGGGGGTTCAGCATTGAGGGGACCCCAGGGCGATGTATCTACTCGCATGGTTAGCCTTAGGGGAGTTCGTGCTTAA 2838 0.4581 MASRFWTQGGSDSEEEESDYDEEVETTVGESASQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNDKQYEDLINKCRENPESEGEKEEEESEEEYESDDEIIEPEQLRKPEAKSDSEASQYEDEKPDAGEGPWDQKLSKKDRLLDRQFMKDPSEIKWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCLQNMLIILDILVQYPNIVVDDSVEPHENESQKGPEYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLMDEPMFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMKKLTELTENGDNGGEASEESKGFEESRIPTAFVVTPEVVARKPTFPENSRTLMDVLVSSIYKCGDERTKARAMLCDIYNHALLDEFSVARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDSKRKVISKTFRRLLEVSDKQTFTGPPENVRDHVMAATRVLSKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLGLDQLAKIFDLSVSRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALAFQLTEKLSILAESNERATEARVGGGGLDLPLRRRDSQDYAAAAAAGSGTASSGGRWQDLSLSQPRQSSGRAGYRSGGGRPMALGQAAGSGYSRDRMGRGTGAGYHGARYQDASYGGSGRTAQGGSALRGPQGDVSTRMVSLRGVRA 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3487 945 MobiDBLite consensus disorder prediction 839 933 - -
Ssu5g3487 945 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu5g3487 945 MobiDBLite consensus disorder prediction 151 174 - -
Ssu5g3487 945 MobiDBLite consensus disorder prediction 175 193 - -
Ssu5g3487 945 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 915 - -
Ssu5g3487 945 Pfam PCI domain 660 788 IPR000717 -
Ssu5g3487 945 MobiDBLite consensus disorder prediction 12 26 - -
Ssu5g3487 945 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 880 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu5g3487 945 SMART PINT_4 721 809 IPR000717 -
Ssu5g3487 945 MobiDBLite consensus disorder prediction 849 869 - -
Ssu5g3487 945 MobiDBLite consensus disorder prediction 45 63 - -
Ssu5g3487 945 MobiDBLite consensus disorder prediction 194 229 - -
Ssu5g3487 945 MobiDBLite consensus disorder prediction 1 63 - -
Ssu5g3487 945 MobiDBLite consensus disorder prediction 134 229 - -
Ssu5g3487 945 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 915 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu5g3487 945 Coils Coil 144 171 - -
Ssu5g3487 945 Gene3D - 727 796 IPR036388 -
Ssu5g3487 945 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Ssu5g3487 945 MobiDBLite consensus disorder prediction 135 150 - -
Ssu5g3487 945 MobiDBLite consensus disorder prediction 27 44 - -
Ssu5g3487 945 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Ssu5g3487 945 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3487 Ssu-Chr5 85710585 85714177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3487 1 945 Eukaryotic Initiation Factors Gene Family AT3G56150 67.650 0.0 1183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3487 K03252 - gmx:100779751 1630.92