Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3485 ATGAAGAACATTCTTAAGAAGCTTCATATCATGTCTAACCAATCAGATGATGCACAAGGGGCTACTTCATCAAAGAGTAACAAGTCCAGTGATGGTTCTTCTTCATCCACTGCCCCTAAGAAGCTTTCAACTTGGTTGCATTCGGTTTCTAGTAGGCGGAGTGCCAGTCCTCCGTCTCCCAACCTGGCTAGAGGAGAAAGAATGGAGCCATTTGATTCAGTGAGCAGTGGTGGTTTGGATGTTGTGTCTGATTCAGCGAGGTATGATTCGGAGTCTAGCACGTCCAGGGATCCTGAGGTGGAAGAGGAATATCAGATACAACTGGCTTTGGAGCTGAGTGCAAAAGAGGATCCTGAGGCTGTACAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCTGAAGTTGTGGCGTATCGTTACTGGAATTACAATGCTCTTGGTTATGATGACAAAATCTCAGATGGTTTCTACGATTTGTATGGGATCTTAACTGAGTCAACCTCTGCAAGAATGCCTTCTCTTGTAGATCTGCAAGGAACACCAACCTCAGATGATGTCACATGGGAAGCAGTCTTGGTCAATATGGCTGCTGATTCCaatttgttgaaacttgaacAAAAAGCCATGGAGATGGCAGTCAATTCAAGAAAAGATTTTGAAGTAGTAGTAGATAGTAACTTGGTACACAAGCTTGCAATAATAGTGGCTGACTATATGGGTGGATCAGTTGAAGATCCTGAAAGCATGTCAAGAGCATGGAGGAGTCTTAGTTACAGTCTAAAAGCAACCCTCGGTAGCATGGTTTTGCCACTTGGTTCATTGACCATTGGATTGGCTCGGCATCGTGCATTGTTATTCAAGGTTTTAGCTGACAGTTTGGGCATCCCATGTCGGTTGGTGAAAGGACTGCAGTATATAGGTTCCGATGATGTGGCAATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTCGACCTAATGGCAGCTCCTGGAACACTTATTCCATCTGATGCTACTGGATCACACATTGAGTGCGACGAATCTTCCTTTGTAGCCAGTCCTTCATCAAGAGAGCTTGATTCATCTCATATAGCATCGTTCAGCAGTGGGGTTGGAAGTTCATCTGAAGAAACTTTAGACTCTGGGACTCtggataaagaaaataaatcaaagcaTTTTGCCTATGCAGGGAAAGAATCTGATGTAAGCGGGCCTGCTACAGGCAAGGAAGAATTAAAGAAACcatcaaatgaaataaaaaatgtagagaAGATCATAGTGAGGGAATCCCCTAGCAGACCTAATTATCCATATATGCATGGAAGATCTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGTGCGTAGAATGAAAGTCAAAGATGTTTCCCAATATATGATTGATGCTGCTAAGGAGAACCCTAACTTGGCTCAAAAACTTCATGATGTTTTACTTGAAAGTGGTGTTGTTGCACCTCCGAActtattttctgaaatttatcATGGGCAGTTAGGTACCCCAACTGAGGCCAATTTTCCAACTgaacaaaaagatgaaaataaacaGGCAAGTGTGCAGCAAGAAACTAAGGCTGATGACAATCTAGTTCCTGCTCGATTTTTGCCTCCTTTACCTCACCACCGAATTCATCGCAAAGCAACTCCTAGCAGTCAGCTGGAGCATTCTAAGCCTGTAGATGGCTTAGGAATTGGCCTTCCTCTTGATACAGGGGAAGCTGCTGCTGGACAGCACATACCTTCTCAGGCAGAAGCAGTTCAGGTAAAGTATGGGAAAAATGTCCCAGTTGCGGCGGCTGcagctgctgctgctgctgttgTTGCATCTTCTATGGTAGTTGCTGTGACGAAGTCAAACACTGACTCAAATCTTGAGATTCCTGTAGCAGCAGCTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAGCAGTATGAGCAGGGCAGTCGGAGTGATGGTGATACGGATGGTGCTGGTTATGAGCCAAAGGGTAGTGATGATGGAGAGCATAATGCTTTAGGAGAAAACTCAGAAGGTGACAGAAAATCCGATAGATCAGTAAGTAATGACAGCGCAAAATCTGATTCTGCGCTAGATGATGTTGCTGAGTATGACATTCCATGGGATGAAATCGCGATGGGAGAGCGTATTGGACTTGGATCATATGGGGAAGTGTACCGTGGTGAATGGCATGGAACTGAAGTTGCTGTAAAGAGGTTTCTATATCAGGATCTCTCTGGTGAATCACTTGAAGAATTCATAAGTGAGGTCCAAATAATGAAAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCTGTTACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGCGGATGGCCCTGGATGCTGCTCGAGGAATGAACAATCTGCACAACTGCACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTAAAGGTATGTGATTTTGGCTTATCACGTATGAAGCATAGTACATTCCTTTCTTCCAGATCAACTGCAGGAACAGTAAGCTATCATAATTTTTACTTAGTCACAGCTGTTGTAAAATCTGttcctttaaataaaatcatgctAATACACATATGCTCACACACAAATTCAGACAATTGGTATATCTTTTAA 2793 0.416 MKNILKKLHIMSNQSDDAQGATSSKSNKSSDGSSSSTAPKKLSTWLHSVSSRRSASPPSPNLARGERMEPFDSVSSGGLDVVSDSARYDSESSTSRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGILTESTSARMPSLVDLQGTPTSDDVTWEAVLVNMAADSNLLKLEQKAMEMAVNSRKDFEVVVDSNLVHKLAIIVADYMGGSVEDPESMSRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYIGSDDVAMNFVKIDDGREYIVDLMAAPGTLIPSDATGSHIECDESSFVASPSSRELDSSHIASFSSGVGSSSEETLDSGTLDKENKSKHFAYAGKESDVSGPATGKEELKKPSNEIKNVEKIIVRESPSRPNYPYMHGRSPSWTEGISSPAVRRMKVKDVSQYMIDAAKENPNLAQKLHDVLLESGVVAPPNLFSEIYHGQLGTPTEANFPTEQKDENKQASVQQETKADDNLVPARFLPPLPHHRIHRKATPSSQLEHSKPVDGLGIGLPLDTGEAAAGQHIPSQAEAVQVKYGKNVPVAAAAAAAAAVVASSMVVAVTKSNTDSNLEIPVAAAATAAAVVATTAAVSKQYEQGSRSDGDTDGAGYEPKGSDDGEHNALGENSEGDRKSDRSVSNDSAKSDSALDDVAEYDIPWDEIAMGERIGLGSYGEVYRGEWHGTEVAVKRFLYQDLSGESLEEFISEVQIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNNLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTVSYHNFYLVTAVVKSVPLNKIMLIHICSHTNSDNWYIF 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3485 930 MobiDBLite consensus disorder prediction 1 102 - -
Ssu5g3485 930 Pfam Protein tyrosine and serine/threonine kinase 732 881 IPR001245 GO:0004672|GO:0006468
Ssu5g3485 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
Ssu5g3485 930 MobiDBLite consensus disorder prediction 517 575 - -
Ssu5g3485 930 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 895 - -
Ssu5g3485 930 SUPERFAMILY Protein kinase-like (PK-like) 721 895 IPR011009 -
Ssu5g3485 930 SMART serkin_6 731 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3485 930 ProSiteProfiles Protein kinase domain profile. 731 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3485 930 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 895 - -
Ssu5g3485 930 MobiDBLite consensus disorder prediction 663 716 - -
Ssu5g3485 930 MobiDBLite consensus disorder prediction 676 709 - -
Ssu5g3485 930 Pfam Ethylene-responsive protein kinase Le-CTR1 141 344 - -
Ssu5g3485 930 CDD STKc_MAP3K-like 737 895 - -
Ssu5g3485 930 MobiDBLite consensus disorder prediction 376 396 - -
Ssu5g3485 930 Gene3D Phosphorylase Kinase; domain 1 724 808 - -
Ssu5g3485 930 MobiDBLite consensus disorder prediction 8 58 - -
Ssu5g3485 930 ProSitePatterns Protein kinases ATP-binding region signature. 737 758 IPR017441 GO:0005524
Ssu5g3485 930 Gene3D Transferase(Phosphotransferase) domain 1 810 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3485 Ssu-Chr5 85697236 85703114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3485 1 895 MAP Kinase Kinase Kinase AT1G73660 59.826 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Ssu5g3485 EDR1 1.3e-76 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3485 - - gmx:100778331 1530.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3485 5 85697236 85703114 Ssu5g3485 5 85697236 85703114 ECH