Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3483 atgGACCCAACTTCGATCCCTCCCCCTCCGGCCATCTCCGCCACCGTCCCCTTCACACTCGAACCCAACAATCACGTGACCCCCGCGGACAACCCCAACCCCAACCCCAACCCCAACCCTAACCATAACCACCCCTCTTACGATGAGATGATATACACAGCAATCGGGGCTCTGAAGGAGAAAGACGGGTCGAGCAAGCGAGCCATAGGAAAGTACATAGAGCAAGTCTACAAGGACCTTCCACCCACTCACTCTGCCCTGTTGACTCACCACCTCAACCGCTTGAAGTCCTCTGGCCTCCTCCTTATGGTCAAAAAATCTTACAAGCTCCCTGGATCTGATCCTCTTCCACCACCTCCGACGTTCCAGGCCCAAAGGAACCGCGGTCGGCCCCCCAAGCCCAAGCCCCAGCCCACCGAGCCAGTCTGGGCTGCGCTCGGCCTCTCCGACGACCCTGCCGTGCAGGCAGCCAAAAGAGGCCCCGGTCGTCCTCGAAAGATTGGAGCCGTGGCTGTGGGCCCCCCCGTGCCGGGCCGAAGAGGTCGCCCTCCTGGGACCGGGAGATCTAAGCTGCCCAAGCGGCCTGGCCGTCCTCCCAAGCCCAAATCCGTGTCGGCGATCTCCAGTGGGCTTAAACGGCGTCCGGGCCGCCCGCCCAAAATCCAATCGAACCTAACCGTCATCCCCTTCGCGGCCCCTGTTGCTTCTCTTGCTCCCGGCCTGCCCACAGTGCCGCCAGTCGTTGCTGCTTCCGTGCCCAATGGGTCTCCCCGGCCCAGAGGGAGGCCCAGAAAGAGTGTTGCTGCTCCGGGACCAGCGCTGTCTAGGGCCGCTGCTGCAGCCCGTGGTCGTGGCCGCGGGCGCCCACGTGGGGTCTTGCCGGTGATGAGGCAGGGTCGGCCTCAGAAGCTCGCCGTGGGAAGGCCCAAAAATCCCGCAGGAAGGCCGGTGGGCCGCCCAAAGGTGATGCTTTTTGCtgcttaa 984 0.6301 MDPTSIPPPPAISATVPFTLEPNNHVTPADNPNPNPNPNPNHNHPSYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYKDLPPTHSALLTHHLNRLKSSGLLLMVKKSYKLPGSDPLPPPPTFQAQRNRGRPPKPKPQPTEPVWAALGLSDDPAVQAAKRGPGRPRKIGAVAVGPPVPGRRGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKIQSNLTVIPFAAPVASLAPGLPTVPPVVAASVPNGSPRPRGRPRKSVAAPGPALSRAAAAARGRGRGRPRGVLPVMRQGRPQKLAVGRPKNPAGRPVGRPKVMLFAA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3483 327 Pfam linker histone H1 and H5 family 44 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu5g3483 327 PANTHER HISTONE H1-LIKE 28 291 - -
Ssu5g3483 327 PRINTS AT-hook-like domain signature 255 266 IPR017956 GO:0003677
Ssu5g3483 327 PRINTS AT-hook-like domain signature 125 135 IPR017956 GO:0003677
Ssu5g3483 327 PRINTS AT-hook-like domain signature 281 291 IPR017956 GO:0003677
Ssu5g3483 327 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu5g3483 327 MobiDBLite consensus disorder prediction 1 15 - -
Ssu5g3483 327 MobiDBLite consensus disorder prediction 1 47 - -
Ssu5g3483 327 MobiDBLite consensus disorder prediction 245 320 - -
Ssu5g3483 327 SUPERFAMILY "Winged helix" DNA-binding domain 40 120 IPR036390 -
Ssu5g3483 327 MobiDBLite consensus disorder prediction 109 222 - -
Ssu5g3483 327 CDD H15 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu5g3483 327 PANTHER HISTONE H1 28 291 - -
Ssu5g3483 327 PRINTS Histone H5 signature 189 208 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu5g3483 327 PRINTS Histone H5 signature 57 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu5g3483 327 PRINTS Histone H5 signature 30 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu5g3483 327 MobiDBLite consensus disorder prediction 112 139 - -
Ssu5g3483 327 SMART h15plus2 41 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu5g3483 327 Gene3D - 40 119 IPR036388 -
Ssu5g3483 327 SMART AT_hook_2 158 170 IPR017956 GO:0003677
Ssu5g3483 327 SMART AT_hook_2 257 269 IPR017956 GO:0003677
Ssu5g3483 327 SMART AT_hook_2 283 295 IPR017956 GO:0003677
Ssu5g3483 327 SMART AT_hook_2 177 189 IPR017956 GO:0003677
Ssu5g3483 327 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Ssu5g3483 327 SMART AT_hook_2 212 224 IPR017956 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3483 48 116 Single Myb Histone (SMH) Gene Family AT1G49950 44.928 1.12e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3483 - - gmx:547676 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3483 5 85678396 85679462 Ssu5g3483 5 85678396 85679462 ECH