Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3482 ATGGGGGGTGGAGGAACACTCGTGGAAGGGATTCGACGCTTGTTTCAACGACGCGCTTCTGCTTCCGTTGAAGACCACAACAACAATGCCAACAATAGCCGCGTCTCAGTGAGAGATTTGCGGGCGCAATTGGCTTCCATTCCCAACCAGGATTACGAAACCGACCTCTCTGTTGACCCGGATTTTGATTTCTCTACCTTGAAGCCCATCAAAGTTCCTACACAAATCCCCTTCATACCCTCTTCCATGGATCATCAAAAAAagGGTGCCCCAGAGACAGAGTTTTTTACTGAGTATGGAGAGGCAAGTCGATACGAGATCcaagaagttgttggaaaagGAAGTTATGGTGTTGTGGGTTCTGCCATTGATACTCATACCCGGGAAAGGGTTGCAatcaagaaaattaatgatgttTTTGAGCATGTATCCGATGCCACGCGGATCCTTAGAGAAATTAAGCTCTTGCGGTTGCTTAGACATCCTGATATTGTGGAAATTAAGCATGTTATGCTTCCTCCTTCTCGGAGAGAGTTCAAGGATATCTATGTTGTGTTTGAGTTGATGGAATCTGACCTCCATCAAGTAATTAAGGCAAATGATGATCTTACTCCTGAGCaccaccaattttttttgtaccaACTTCTCAGGGGCCTGAAATATATGCATACAGCAAACGTGTTTCATCGTGATTTGAAGCCTAAAAATATTCTTGCTAATGCTGATTGCAAactaaaaatatgtgattttgggcttgctCGAGTTTCCTTTAATGATTCTCCATCAGCTATATTCTGGACTGATTATGTTGCAACTCGGTGGTACCGTGCACCTGAACTATGTGgttcttttttctcaaaaTATACCCCCGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCATTATTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACCGATTTGCTTGGCACTCCTCCTCCTGAGTCCATTGCGAGGATTCGAAATGAGAAAGCTAAAAGGTATCTTAATAGCATGAGAAAAAAGCAATCAGTTCCATtctcccaaaaatttccaagtGCAGATCCACTGGCCCTTCGTTTACTGGAGCACCTACTTGCATTTGATCCTAAAGACCGTCCAACAGCTGAAGAGGCATTAGCTGATCCTTACTTCCGTGGTTTGGCAAACGTGGACCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAATTGACCAAAGAAGATGTCAGAGAGTTAATTTATCGAGAGATTTTGGAGTATCATCCCCAAATGCTCCAGGAATATCTTCGTGCTGGAGATCAAACTAGCTTCATGTATCCAAGTGGGGTCGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCATTGCAGAGACAGCATGCTTCCTTACCTAGAGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACAACGATTCTGAAAAGCCAAGTGGATCAAATCTTCAGAGTCCTCCAGAGTCTGATGTGACAGGTGCTCAAAATGGAACCCCCAAACCAAACTACAGTACACGTAGCTTGTTGAAGAGTGCCAGTATTAGCGCTTCCAAGTGCATAGatgtgaaacaaaataaaaatccagAGGAGCCAATTATGGAGGTAAATGGTGATGAGGCAGTGGATGGAGTGACAGATGAGATTGCTGCCCTCCATGCTTGA 1767 0.4097 MGGGGTLVEGIRRLFQRRASASVEDHNNNANNSRVSVRDLRAQLASIPNQDYETDLSVDPDFDFSTLKPIKVPTQIPFIPSSMDHQKKGAPETEFFTEYGEASRYEIQEVVGKGSYGVVGSAIDTHTRERVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHVMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYMHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDSPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPPPESIARIRNEKAKRYLNSMRKKQSVPFSQKFPSADPLALRLLEHLLAFDPKDRPTAEEALADPYFRGLANVDREPSTQPISKLEFEFERRKLTKEDVRELIYREILEYHPQMLQEYLRAGDQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCAPKDESKQNNDSEKPSGSNLQSPPESDVTGAQNGTPKPNYSTRSLLKSASISASKCIDVKQNKNPEEPIMEVNGDEAVDGVTDEIAALHA 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3482 588 SUPERFAMILY Protein kinase-like (PK-like) 101 401 IPR011009 -
Ssu5g3482 588 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 67 529 - -
Ssu5g3482 588 ProSiteProfiles Protein kinase domain profile. 105 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3482 588 Gene3D Transferase(Phosphotransferase) domain 1 191 419 - -
Ssu5g3482 588 SMART serkin_6 105 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3482 588 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 67 529 - -
Ssu5g3482 588 Pfam Protein kinase domain 105 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3482 588 Gene3D Phosphorylase Kinase; domain 1 121 442 - -
Ssu5g3482 588 ProSitePatterns Protein kinases ATP-binding region signature. 111 135 IPR017441 GO:0005524
Ssu5g3482 588 CDD STKc_TDY_MAPK 104 441 - -
Ssu5g3482 588 MobiDBLite consensus disorder prediction 494 509 - -
Ssu5g3482 588 ProSitePatterns MAP kinase signature. 140 243 IPR003527 GO:0004707|GO:0005524|GO:0006468
Ssu5g3482 588 MobiDBLite consensus disorder prediction 475 540 - -
Ssu5g3482 588 MobiDBLite consensus disorder prediction 510 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3482 Ssu-Chr5 85660225 85664589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3482 1 587 MAP Kinase Gene Family AT1G73670 70.588 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Ssu5g3482 Pkinase 5.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3482 - - gmx:100780831 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3482 5 85660225 85664589 Ssu5g3482 5 85660225 85664589 ECH