Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3469 ATGGTTTTGtacctttttattataatctttCTATCCGATATTGGTTGTGATATAGCAGAAGACAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCAGAAGTTGAGAAATCTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGTGCAGGCTGTTGAGGCCGAGCCAAAAGTGAAAGATAAGGAGATTCCTTCtgttcaagaagaagaagaagaaccagagatgaagaaaagacaCTTGAATGTTGTGTTTATTGGCCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAAGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGACAACTAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAACATGATTAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGGGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGGCTAAGCTCCTTGTTGTTGTCAATAAAATGGACGAGCCTACAGTGCAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTTAAGCAATCTGGATACAATGTAAAGAAAGaTGTCTTGTTTTTACCAATATCTGGTCTAATGGGTACAAACATTAAAACAAGAGTGGATAAAAGCGTTTGTCCATGGTGGAATGGGCCTTGCTTATTTGAGGCCCTTGATGCTGTTGAAGTTCCACCACGAGATCCCAAAGGTCCTTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACCGTTGTTATGGGCAAAGTTGAATCTGGTAGTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAACAAgGATCAAGTAAAAGTTGTTGCCATATTTATTGATGAAGATCGTGTTAAACGTGCTGGACCGGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATAGTATCTGGGTTCGTCCTGTCTAGTGTTGCTAAGCCAGTACCAGCAGTTACAGAGTTTGTTGGTCAGTTGGTGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAAGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTCTTACAGCAAATTGATCAAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCTGTTGTAGTGTGCCGTGTTCAgGTTAATAACTCTATTTGCATTGAGAATTTCTCTGATTTTCCACAACTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCCATCGGAAAAGTCACTGGTCTGTGA 1518 0.3986 MVLYLFIIIFLSDIGCDIAEDNNGVVNPEDGKPEVEKSDKMDEDPKQEVQVQAVEAEPKVKDKEIPSVQEEEEEPEMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLMGTNIKTRVDKSVCPWWNGPCLFEALDAVEVPPRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEEEDIVSGFVLSSVAKPVPAVTEFVGQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDQKTKKPMKKKVLFVKNGAVVVCRVQVNNSICIENFSDFPQLGRFTLRTEGKTVAIGKVTGL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3469 505 CDD EF1_alpha 83 304 - -
Ssu5g3469 505 Pfam Elongation factor Tu GTP binding domain 79 292 IPR000795 GO:0003924|GO:0005525
Ssu5g3469 505 CDD eRF3_II 310 391 - -
Ssu5g3469 505 SUPERFAMILY Translation proteins 302 395 IPR009000 -
Ssu5g3469 505 CDD eRF3_C_III 397 505 - -
Ssu5g3469 505 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 135 150 IPR031157 -
Ssu5g3469 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 314 IPR027417 -
Ssu5g3469 505 MobiDBLite consensus disorder prediction 23 76 - -
Ssu5g3469 505 Gene3D - 59 303 IPR027417 -
Ssu5g3469 505 Pfam Elongation factor Tu domain 2 323 389 IPR004161 GO:0005525
Ssu5g3469 505 PRINTS GTP-binding elongation factor signature 162 172 IPR000795 GO:0003924|GO:0005525
Ssu5g3469 505 PRINTS GTP-binding elongation factor signature 83 96 IPR000795 GO:0003924|GO:0005525
Ssu5g3469 505 PRINTS GTP-binding elongation factor signature 222 231 IPR000795 GO:0003924|GO:0005525
Ssu5g3469 505 PRINTS GTP-binding elongation factor signature 178 189 IPR000795 GO:0003924|GO:0005525
Ssu5g3469 505 PANTHER BNAA06G12300D PROTEIN 72 499 - -
Ssu5g3469 505 PRINTS Yeast eukaryotic release factor signature 70 86 IPR003285 GO:0000288|GO:0003747|GO:0005525|GO:0006415
Ssu5g3469 505 PRINTS Yeast eukaryotic release factor signature 185 192 IPR003285 GO:0000288|GO:0003747|GO:0005525|GO:0006415
Ssu5g3469 505 PRINTS Yeast eukaryotic release factor signature 220 227 IPR003285 GO:0000288|GO:0003747|GO:0005525|GO:0006415
Ssu5g3469 505 PRINTS Yeast eukaryotic release factor signature 306 317 IPR003285 GO:0000288|GO:0003747|GO:0005525|GO:0006415
Ssu5g3469 505 PRINTS Yeast eukaryotic release factor signature 443 452 IPR003285 GO:0000288|GO:0003747|GO:0005525|GO:0006415
Ssu5g3469 505 PANTHER TRANSLATION FACTOR 72 499 - -
Ssu5g3469 505 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 400 504 IPR009001 -
Ssu5g3469 505 Pfam Elongation factor Tu C-terminal domain 396 504 IPR004160 -
Ssu5g3469 505 MobiDBLite consensus disorder prediction 30 76 - -
Ssu5g3469 505 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 79 305 IPR000795 GO:0003924|GO:0005525
Ssu5g3469 505 Gene3D Translation factors 308 393 - -
Ssu5g3469 505 Gene3D Translation factors 398 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3469 Ssu-Chr5 85479916 85488074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3469 79 500 Eukaryotic Initiation Factors Gene Family AT5G60390 37.412 1.86e-96 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3469 K03267 - gmx:100793653 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3469 5 85479916 85488074 Ssu5g3469 5 85479916 85488074 ECH