Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3466 ATGGCAGACATGGATCCGTCCAAAAAAGTGGCCGATAGATATCTGAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTGTATAAAGCCATTGATACCCACACAGGACAGACTGttgcaattaagaaaattcGGCTTGGCAAGCAGAAAGAAGGGGTAAATTTTACGGCACTTAGAGAAATTAAGCTGCTTAAAGAGCTCAAAGATCCAAACATTATTGAATTGATTGATGCATTTCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATACGAGACcggaatatttttctttcaccaGCTGATACAAAATCCTACCTTCAAATGACGCTAAAAGGTCTTGCTTATTGCCACAAGAAATGGATTTTGCATAGGGATATGAAgccaaataatttattgataggATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGCCCAGATAGAAGGTTTACTCATCAGGTTTTTGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTTCTGGGGTTGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCTTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCAGCATTTGGCACCCCAACAGCTTCTCAGTGGCCTGATATGGTATACCTGTCTGATTATGTTGAATATCAATATGTTCCTGCCCCTCCTCTACGTTCTTTATTTCCAGTGGCAAGTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCATTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCGGATCCAGACAAGCTCCCTAGACCTGCTCCCAAGAGGGAATCTAGGGTTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGGACGCGATGGGTTTGAAGGAAATTCTCTGCAAGCAGATAAGGTTGATGGCAGTTTTGGTGATTTCAGACAGACAACTGATGATAATACAGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTATCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAgatcatatttaaaaagaaaattagatctAGAATTTCAACAGCCGGCAGAATGA 1251 0.3893 MADMDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAYCHKKWILHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWAAACIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLSDYVEYQYVPAPPLRSLFPVASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPDKLPRPAPKRESRVSDFNLQEGPTVLSPPRKSRRVMPGRDGFEGNSLQADKVDGSFGDFRQTTDDNTGKNESAPMSVDFSIFGLKPPNRPTINSADRSYLKRKLDLEFQQPAE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3466 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Ssu5g3466 416 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Ssu5g3466 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Ssu5g3466 416 MobiDBLite consensus disorder prediction 294 379 - -
Ssu5g3466 416 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Ssu5g3466 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3466 416 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Ssu5g3466 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3466 416 MobiDBLite consensus disorder prediction 362 377 - -
Ssu5g3466 416 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3466 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Ssu5g3466 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Ssu5g3466 416 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3466 Ssu-Chr5 85454745 85458312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3466 8 412 Core Cell Cycle Gene Families AT1G18040 75.062 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Ssu5g3466 Pkinase 1.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3466 K02202 - gmx:100776618 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3466 5 85454745 85458312 Ssu5g3466 5 85454745 85458312 ECH