Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3464 ATGGGAATTGGGAGACAGGAAGTGGTGGAAGAAGTGAAGAGACAGCTACGGTTAGCAGTGCCTCTCTTCTCAGTTGGAATTCTACAGTACATTCTGCAAACCATCTCTCTGATGTTTGTTGGCCATCTTGGTACCCTCCCTCTTTCGGGTGCTTCCATGGCCACTTCCTTTGCATCAGTCACTGGCTTCAACTTATTGtTGGGGATAGCTACTGCACTGGACACATTTTGTGGTCAATCAAATGGGGCAGGACAGTACCACATGCTTGGCATACACATGCAGAGATCCATGGTTCTTGTATCAACGATGAGTGTGTTCCTTGCAGTTATCTGGGCCAACACAGAACCAATTCTAAATGCTTTGCACCAGGACAAAGCCATATCCAAGGAAGCTGGCTCATATGCCCGTTACATGATCCCAAGTTTATTTGCATACGGTCATCTTCAGTGCATTCTCAAGTTCTTGCAAACCCAAAACATTGTGTTCCCAATGGTGCTAACTTCTGGAGTTGCAGCTGTGCTTCATGTCCTTTTCTGTTGGCTTTTGGTTTTCAAGTTGAGGCTTGGAAGCAGAGGAGCAGCCTTAGCCAATTCCATATCTTACTGGGTAAATGCAATCTTGATTTCTCTGTATGTGAGGCTCTCTTCCTCATGCAAACAATCTTGGACAGGGTTTTCAAAGATGGCCCTGCGCAACCTACTTGAATTCCTTAAACTCGCTGTTCCTTCAGCTATTATGCACTGCTTGAAAGTCTGGACATTTGAACTGATGGTCCTCATGTCTGGTCTTCTTCCTAACCCAGCATTAGAAACTTCAGTGCTTTCAATATGCCTTAATACATTTGGTTTAGCTTGGATGATCCCTTTGGATTCAGTGCTGCTGTAA 885 0.4486 MGIGRQEVVEEVKRQLRLAVPLFSVGILQYILQTISLMFVGHLGTLPLSGASMATSFASVTGFNLLLGIATALDTFCGQSNGAGQYHMLGIHMQRSMVLVSTMSVFLAVIWANTEPILNALHQDKAISKEAGSYARYMIPSLFAYGHLQCILKFLQTQNIVFPMVLTSGVAAVLHVLFCWLLVFKLRLGSRGAALANSISYWVNAILISLYVRLSSSCKQSWTGFSKMALRNLLEFLKLAVPSAIMHCLKVWTFELMVLMSGLLPNPALETSVLSICLNTFGLAWMIPLDSVLL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3464 294 TIGRFAM matE: MATE efflux family protein 21 288 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g3464 294 CDD MATE_eukaryotic 11 289 IPR045069 GO:0042910|GO:1990961
Ssu5g3464 294 PANTHER MULTIDRUG RESISTANCE PROTEIN 3 289 - -
Ssu5g3464 294 Pfam MatE 21 181 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g3464 294 PANTHER PROTEIN DETOXIFICATION 3 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3464 Ssu-Chr5 85445356 85446603 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3464 K03327 - gmx:100776083 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0539 9 25339699 25346038 Ssu5g3464 5 85445356 85446603 ECH
Ssu5g3464 5 85445356 85446603 Ssu5g3464 5 85445356 85446603 ECH