Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3445 ATGCCTGTTGTCACGAACACAACAACACCAACAGTAGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTCAACCACCACCCCATTTCAGAAACAGATCCAAACCCTCAAATCCCTTCCATTATCCAATCCACTAGGTGCAAGTCCACCATCTCCTCCATGCTCCTCTCCACATTCTCCAACAACACCTCCTCCAATGACAATGGCAGTGCCCATAGcaagaaaaaaagtaacttttctGCAGCAACCTTCAGAGGTTTGGGGTGCACCGCCGGCGCGTCGCAGGAGGTGTCGGTCCCGGCGGTGATTCGCACCTCCGCCGACTGGCAAGGGAAGAATACCAGAAAAAAGAAGCACAAAagaagcagcagcagcagcaagaACAAGACTTTCCATGGTGGGGTTCTAGAAGGTTCCAATCCTGGGTGTGTGGATTTTCAGGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGCAGATGCTGCTGCCTCTGTTGATTGTGTTGTGGCCAGGAGGAATGTGTCTGCAAGAGGGAAAATTGATGTGGACAAGATGTCTCACAGGGAGCGATCATCATATGTGGGAAGGCGCACAGACACCTTCTCTTTTCTGGACACTGACTCTGACATTTTCACGCCACGCTCTGCCTCTGACTCCTATGGAACTGCAACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAATCTACAAATGGGTGGGCAATTAAATTCATATGATCAATTCAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTAGAGCTGGGTGAGAGAATTGGTTCTGTGAACACTGGACTTAAAGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGCTTCAATTTTGGGATGATGCATCAAAGCATCAAATAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCAGGTGATGAGCTGGGGAGGCTAAATTGTGAACACAGCTATCACTTTCAGTGTATAAAACAATGGGTTGCACAAAAAAATTTCTGCCCAGTATGTAAGCAACAAGTTGCGGCTCGACACTGA 1101 0.4514 MPVVTNTTTPTVAEHIKWRRPRNQFNHHPISETDPNPQIPSIIQSTRCKSTISSMLLSTFSNNTSSNDNGSAHSKKKSNFSAATFRGLGCTAGASQEVSVPAVIRTSADWQGKNTRKKKHKRSSSSSKNKTFHGGVLEGSNPGCVDFQDVWCGPGIGFSADAAASVDCVVARRNVSARGKIDVDKMSHRERSSYVGRRTDTFSFLDTDSDIFTPRSASDSYGTATYYRHVRDPSSDGFAEIMMLQGNLQMGGQLNSYDQFRDWRLDVDNMSYEQLLELGERIGSVNTGLKEDEMGRNIRKTRLQFWDDASKHQIDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWVAQKNFCPVCKQQVAARH 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3445 366 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 366 - -
Ssu5g3445 366 SUPERFAMILY RING/U-box 317 363 - -
Ssu5g3445 366 MobiDBLite consensus disorder prediction 109 134 - -
Ssu5g3445 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 366 IPR045191 GO:0061630
Ssu5g3445 366 Pfam Ring finger domain 316 359 IPR001841 -
Ssu5g3445 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 364 IPR013083 -
Ssu5g3445 366 CDD RING-H2_PA-TM-RING 317 359 - -
Ssu5g3445 366 ProSiteProfiles Zinc finger RING-type profile. 318 359 IPR001841 -
Ssu5g3445 366 SMART ring_2 318 358 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3445 Ssu-Chr5 85026414 85031312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3445 12 273 C3H Transcription Factor Family AT1G73760 43.110 5.67e-58 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3445 - - gmx:100788837 630.943