Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3444 atggggaagaagaagaagagggttTCCTCGAAGGTGTGGTGCTATTACTGCGATCGCGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAAGCGAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCTGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCCAATGCAAAACCTGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCTTAGCTGCTCATTATGGTGAAGAAGAGGATGACGTTCCATCAAAGGCAGCCAAGTTGGATATTCCATCAACTCAGCTTGTAGGTGGAATGGTGCCACCTCCTTTGGGTACAGGTTATCCCCCTCGACCAACTTTGCCCACAATTCCACCAgtTTATAATCCAGCTGTGCCCGTGCCTCCAAATGCCTGGGTAGTTCCACCTCGACCTCAGTCATGGTTTCCTCAGCCTCCAGCTGTTTCAGTTCCTCCTCCTGCCCCCTACACACAACAGCCATTATTTCCTGTGCAGAACGTGAGGCCTCCACTGCCAGCAACTGCTTCTCCTGCACTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTGCACCTGTCCCAGTTTCACAACCTTTATTTCCTGTAGTTGGAAATAACCATACAACGACTCAAAATTCAACATTTTCTGCTGCACCTCTGCCCTCAACTGTTCCATCAGTTACTCCAGTGCTGTCTACAAATGTCCCTGTTGATGCACATTTGAGTGCCAACTCTTCTATAACAAGTAGTTATCAGGCTATAGGGGTTCCAGGTGGAGCAGCAAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTTCTCAGCCTGCCACCAATGAAGTCTACTTAGTTTGGGATGATGAGGCGATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGTAATAGATGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTATGCTTCCTGTTTTCAGATTCAGTTGTTTACACATTGTTTCCTATTTACAGAGGTACATTCTGTGTaa 1179 0.4623 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKLDIPSTQLVGGMVPPPLGTGYPPRPTLPTIPPVYNPAVPVPPNAWVVPPRPQSWFPQPPAVSVPPPAPYTQQPLFPVQNVRPPLPATASPALQTQITPPGLPTSAPVPVSQPLFPVVGNNHTTTQNSTFSAAPLPSTVPSVTPVLSTNVPVDAHLSANSSITSSYQAIGVPGGAASNSHSYASGPNTGGPSIGPPPVIANKAPASQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQVSHTTSVIDGVAFTSNQMSRLYASCFQIQLFTHCFLFTEVHSV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3444 392 PANTHER ZINC FINGER PROTEIN 207 1 363 - -
Ssu5g3444 392 SMART c2h2final6 12 35 IPR013087 -
Ssu5g3444 392 SMART c2h2final6 36 59 IPR013087 -
Ssu5g3444 392 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Ssu5g3444 392 Gene3D Classic Zinc Finger 1 66 - -
Ssu5g3444 392 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Ssu5g3444 392 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Ssu5g3444 392 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3444 Ssu-Chr5 85013535 85015950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3444 1 371 C2H2 Transcription Factor Family AT1G30970 62.725 1.82e-143 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g3444 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3444 - - gsj:114421245 648.662