Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3439 ATGGGCATTCTAAAGAACACAATCAATGCCCCCATTAGCTTCCAATGGACTGGTCCAGATGTATGTAAATGGAAGCACGTTGAATGTGATTCATCTAAGCGTGTGATAGCTATTCAGATTGGGAAGCAAAACCTCCAAGGCTCTCTCCCCAAGGAGCTTGTGAAGATAACAACATTGGAACATTTTGAGTGCCAAAGCAATAGTCTCATAGGGTCATTCCCCTACCTCTCAAAATCCTTGCAAAAGTTAGTAATCCGTGACAATAACTTCAGCTTCATTCCAAATGATTTCTTCAAAGGTATGAGCAATTTGAAAGAGGTGAGAATTGATGACAACCCCTTCTCTCAATGGCACATTCCTAGCACTCTCAGGGACTGTGTTGCACTCCAAATTTTCAGTGCTCAAAGTGTTGGCCTTATTGGGACAATTCCAAACTTCTTTGGCAAAGATGGTCCCTTTCCAGGTTTGGTTCTTTTAGCATTGTCTGGTAATTTTCTAGAAGGTGAATTGCCTGCAAGCTTTTCAGGCAGTTCTATAGAGAACCTTTTGGTGAATGGACAAAATAGCATCTCTAAGCTCAATGGCACCCTTGTTGTGTTACAAAACATGAAATCTTTAAAGCAGATTTGGGCTAATGGGAACTCATTCACGGGTCCCATACCAGACTTGTCACACCATGATCAACTTTACGAAGTGAATTTAAGGGATAACCAATTGACTGGTGTTGTCCCGCCCTCTCTAATGGCTCTTCCAAATCTGCAGGTTGTGAACTTAACCAATAATGTTCTTCAAGGATCCCCTCCTAAGTTTAGGGATGGGGTAAAAGTCGACAATAACATGGATAAGGGGAGAAATCAGTATTGCACAAACGTGTTAGGGCAACCATGTAGTCCCTTCGTAAATGCTTTATTATCTGTCGTTGAACCTTTGGGTTATCCTCTCAAGTTAGCTCAAAGTTGGCAGGGTAATGATCCATGTACTAATAAATGGATAGGCATAGTTTGCTCTGGGGGAAACATTTCaattatcaattttcaaaacatggGTTTGTCTGGCACTATTTGTCCATGTTTTGCCAACATTACTTCTATGACAAAGTTGCTTCTTACTAACAATGGTCTCATTAGTACCATACCAAATGAACTTACTAGTTTGCCCCTTTTACAAGAGTTAGATGTTTCCAATAATCATTTATATGGAAAAGTACCATCATTTCGCAAAGACGTGGTTCTTAAATTAGGTGGGAATCCTGATATTGGAAAGGATAAACCAACTTTCTCAGGTCATGGAGGCAATGGTAACAATCATAATAGCAACCATAATACTGCAATCATTGTTGGAATTGTGATGGTGGTTGCTATTGTACTTGTTCTCGGGGTTATAATACTTATTAAGTTCAAGAGAAAGTGGAAGCATATGGGAAAAGCTCAAAGTCCAATTGCAACTATGGTACTTCCTCACCATTATGGGGATGGAAATGCTGCAAATATAAGTGGTGGATGTTATGGGGAAGGATCTGCTAGTGCATTATTAAGTCCTACAGGTAATGTTTATCAGGTGGAAGCTAGTAAcatgttaatttcaattcaacTTTTAAGAGAAGTTACCAACAATTTCAATGAAGAAAACATATTAGGGAAAGGGGGATTTGGCACTGTATACAAAGGAGAGTTGCATGATGGGACACAGATTGCAGTGAAAAGGATGCAAACAGCAGGATTGGTGGATGAGAAGGGTCTAAGCGAATTCACAGCTGAAATTGCAGTGCTTACCAAGGTTCGGCATAGAAATTTAGTTGCACTCTTGGGGTTTTGCTTGGACGGAAGTGAGAGACTTCTTGTCTATGAGTATATGCCTCAAGGTGCTCTTAGTGAACACTTGATTAGTTGGAAATGTGAAGGGTTAAAACCATTGGAATGGAAGACAAGGCTTAGTATTGCCTTAGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACAACAAATTTTTATCCATAGGGATCTTAAACCATCCAACATTTTGCTTGGAGATGATATGCGTGCTAAAGTATCAGACTTTGGATTGGTCCGGCTTGCTCCTGAAGGGAAAACCTCATTTCAAACTAGACTTGCTGGAACATTTGGATATATGGCACCAGAGTATGCAGCCACTGGACGACTTACAACAAAAGTTGATGTATATAGTTTTGGAGTGATTCTTATGGAAATGATATCCGGAAGGAAAGCACTTGATGACAACCTACCAGAAGAGAACATCCACCTTGTCACATGGTTTCGTAAAATGCTACTGAACAAAGATTCATTCCAAACAATCATCGACCCAACAATTGAAGTCGATGAAGAAACCTTATCTAGTATTAACACTGTTGCAGAGTTAGCTGGGCACTGTTGTGCAAGGGAGCCTTATCAGCGTCCTGACATGAGTCATGCAGTGAATGTGCTATCATTTCTTGTTGAGTGTGGAAGCCTTCAGAAACAGATATTGATGACATATATggaattaatttag 2514 0.3946 MGILKNTINAPISFQWTGPDVCKWKHVECDSSKRVIAIQIGKQNLQGSLPKELVKITTLEHFECQSNSLIGSFPYLSKSLQKLVIRDNNFSFIPNDFFKGMSNLKEVRIDDNPFSQWHIPSTLRDCVALQIFSAQSVGLIGTIPNFFGKDGPFPGLVLLALSGNFLEGELPASFSGSSIENLLVNGQNSISKLNGTLVVLQNMKSLKQIWANGNSFTGPIPDLSHHDQLYEVNLRDNQLTGVVPPSLMALPNLQVVNLTNNVLQGSPPKFRDGVKVDNNMDKGRNQYCTNVLGQPCSPFVNALLSVVEPLGYPLKLAQSWQGNDPCTNKWIGIVCSGGNISIINFQNMGLSGTICPCFANITSMTKLLLTNNGLISTIPNELTSLPLLQELDVSNNHLYGKVPSFRKDVVLKLGGNPDIGKDKPTFSGHGGNGNNHNSNHNTAIIVGIVMVVAIVLVLGVIILIKFKRKWKHMGKAQSPIATMVLPHHYGDGNAANISGGCYGEGSASALLSPTGNVYQVEASNMLISIQLLREVTNNFNEENILGKGGFGTVYKGELHDGTQIAVKRMQTAGLVDEKGLSEFTAEIAVLTKVRHRNLVALLGFCLDGSERLLVYEYMPQGALSEHLISWKCEGLKPLEWKTRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKTSFQTRLAGTFGYMAPEYAATGRLTTKVDVYSFGVILMEMISGRKALDDNLPEENIHLVTWFRKMLLNKDSFQTIIDPTIEVDEETLSSINTVAELAGHCCAREPYQRPDMSHAVNVLSFLVECGSLQKQILMTYMELI 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3439 837 Gene3D Ribonuclease Inhibitor 3 294 IPR032675 -
Ssu5g3439 837 SUPERFAMILY L domain-like 300 406 - -
Ssu5g3439 837 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 2 822 - -
Ssu5g3439 837 CDD STKc_IRAK 545 816 - -
Ssu5g3439 837 PANTHER OSJNBA0070M12.3 PROTEIN 2 822 - -
Ssu5g3439 837 Gene3D Ribonuclease Inhibitor 299 423 IPR032675 -
Ssu5g3439 837 ProSiteProfiles Protein kinase domain profile. 539 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3439 837 SMART serkin_6 539 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3439 837 ProSitePatterns Protein kinases ATP-binding region signature. 545 567 IPR017441 GO:0005524
Ssu5g3439 837 Gene3D Transferase(Phosphotransferase) domain 1 618 829 - -
Ssu5g3439 837 SUPERFAMILY L domain-like 4 270 - -
Ssu5g3439 837 SUPERFAMILY Protein kinase-like (PK-like) 518 818 IPR011009 -
Ssu5g3439 837 Pfam Leucine rich repeat N-terminal domain 301 336 IPR013210 -
Ssu5g3439 837 Pfam Leucine rich repeat N-terminal domain 4 30 IPR013210 -
Ssu5g3439 837 Pfam Protein kinase domain 540 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3439 837 Gene3D Phosphorylase Kinase; domain 1 508 617 - -
Ssu5g3439 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3439 Ssu-Chr5 84902580 84905613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3439 35 816 Receptor kinase-like Gene Family AT5G07280 31.325 1.43e-79 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu5g3439 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3439 - K00924 gmx:100788903 1339.71