Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3436 ATGGCGCAGGCAGGAACAGGAATGGAGCAAGTGCAGTGCTTCGGGCGTAAGAAGACGGCGGTGGCGGTGACGTACTGCAAGCGCGGTCGCGGGCTCATCAAAATCAACGGGTGCCCGATCGAGCTGGTGGAGCCGGAGATCCTGCGGTTCAAGGCGTTCGAGCCGATCCTCCTCCTCGGGCGGCACCGCTTCGCCGGCGTGGACATGCGCATCCGCGTGAAGGGCGGCGGACACACCTCCCAGATCTACGCCATCCGGCAGAGCGTCGCGAAGGCCCTCGTGGCGTTCTACCAGAAGTACGTCGACGAGCAGAGCAAGAAGGAGATCAAGGACATCCTCGTCAGGTACGACCGCACCCTCCTCGTCGCCGACCCCCGCCGCTGCGAGCCCAAGAAGTTCGGCGGTCGCGGCGCTCGCGCCAGGTTCCAGAAGTCCTACCGTTga 444 0.6486 MAQAGTGMEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSVAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3436 147 ProSitePatterns Ribosomal protein S9 signature. 75 93 IPR020574 GO:0003735|GO:0005840|GO:0006412
Ssu5g3436 147 Pfam Ribosomal protein S9/S16 15 147 IPR000754 GO:0003735|GO:0005840|GO:0006412
Ssu5g3436 147 PANTHER RIBOSOMAL PROTEIN S9 6 147 IPR000754 GO:0003735|GO:0005840|GO:0006412
Ssu5g3436 147 Gene3D - 3 147 IPR014721 -
Ssu5g3436 147 SUPERFAMILY Ribosomal protein S5 domain 2-like 10 147 IPR020568 -
Ssu5g3436 147 PANTHER - 6 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3436 Ssu-Chr5 84844398 84844841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3436 9 147 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 89.209 1.57e-92 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3436 K02960 - gmx:100816874 281.567