Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3429 ATGTCGGGGAGTTCTTCTTCTACTGTCGTGTCTCCTCCTCTAATTGGGCATGATGTGTTTCTCAACTTCAGAGGGGAAGACACCCGTGACAGCTTCGTCAGTCACCTTCGTGCAGAACTACacaggaaaaatattaaaacatttatgGATGACAGATTAGGGAGGGGCGAAGAGATTTCACCTGGACTGCACAAAGCAATAGAAGAATCAATGATTTATGTCCTCATTTTCTCCGAAGACTATGCATCTTCCACATGGTGTTTGGATGAACTCACAAAGATACTCGAATGCAACAAGAGATATGGAAGGAATGTCATACCAGTTTTCTACAAGGTGGATCCATCAAATGTCAGAAATCAGAGAGGGAGATATGCAGAAGCATTTGTTAAGCATGAACGTCGATTTAAGGACAAGATGGACAAAGTGCACGCATGGAAGGCAGCTCTAACGGAAGCATCGGGACGCTCGGGCTGGGTTTCACAAGTAACCAGACCAGAATACACACTTGTTGCAGAAATTGTGAaagatattttaagaaaattgaatcGTTCTTCCATAAGTGATCATCAAGGAATTATTGGAATCGAAAACCATATTGCACGAATCCAGTCCTTGTTGCATCCTGAGTCACCGGCTATTCGGATCATAGGAATTTGGGGCATGGGAGGAATAGGAAAAACAACAATTGCTAGTCAAATATATCACAAGTTGGCAGTGCAATTCGCTTCCAGCAGCCTCGTTTTAgatggtaaaaaagaaatagaaagacaTGGAATACAGCATATAAGAAGCAAATATTTATCAGAGCTTCTAGAAGAAGACAGCACATCCTCTGGATTAAGTTTTTCACATGAAAGGCTCAAACGGACAAAGGTTCTCCTTGTTCTGGATGATGTGAACAATTCGGGTCaactaaaagatttaattggAGGGCGTGGCGATTTTGGCCAGGGCAGTAGAATCATTGTGACCAGTAGAGACTTGCAAGTGCTTAAGAATGCTGAAGCGGatgaaatatatgaaattaaggAAATGAATTTTCAAGACTCGTTAAAACTGTTCAGTTTAAATGCTTTTAAACAAAACCATCCAAGAGAAACTTATATGGACTTATCAATAAAGATATTGAATTATGCCAAAGGGATTCCGTTAGCTCTCAAGGTTTTGGGCTCATTGCTTTATGGTAGAACAAAGGAAGTATGGGAAAGCGAGTTGCAAAAGTTGGAAAAGCTTCCCGATCTTGAAATTttcaatgtattaaaattaagttatgatGGGCTTGACGAGGAGCAGAAGGATATATTTCTTGACATAGCTTGCTTTTATAGAGGACATGAGGAGAATGTCGTTGCACAAACGCTGGGTAGCTGTGGTTTCTATGCCAAGATTGGCATGAATGTTCTCAAAGATAGGTGCCTAATATCTATTTTGGATGGTAGAATTGTGATGCATGATCTAATACACGGAATGGGACAAGAAATTGTTCGTCAAGAATGTGTCAGTAATCCTGGAAAACGCAGTCGATTGTGGAAGGTTGAGGAAATTTATCATGTTTTAAGAAAGATCAAGGGGACAGATGTGATACAGTGTATATTGCTCGACATATGCAAAATCAAAGAAGTTGAACTACATGCTGAAACTTTCAAAAAGATGGACAATCTGAGGGTGCTCCAGTTCTATGAGTCTTCTGGCTATTGGAACAAATCAAATGTGTTTCTTGAATCATTTCTTGAAAGTCTTCCGGATGGTTTAAAAATTCTGCGTTGGGATGGCTTCCCTCAGAGATCTTTGCCACAGAACTTTTGCCCAGAAAATCTTGTTAATCTTGAAATGCGACGTTGCCAGCTTGAAGAACTTTGGGAAGGAGATCAGTATTTACCGAATTTGAAAAGGCTCGACCTGAGTTATTCCTCGAATCTAATTCGAATACAGGACCTTTATCTGTCACCAAATATTGAAGAAATAATTCTCAGTGATTGTTTTAGCTTGCTTCAAGTCTACTCCTCAGGATTCCTCAGCAAGCTCaactgtttatttttaaatgattgtTGCGCAAGTCTTGAAAGTATTCCATCTTCCATTGGAAATCTCAGCAAACTCTGCAAGTTAGGCCTTGCCTACTGTGTATCACTTGAAACTTTACCGAGcagcattttcaaattgaaGTTGACGAACCTTGATTTGTATGGTTGCTCAATGCTGAGAACCTTCCCAGAGATCTTGGAGCCTGCAGAAACTTTTGCTCACGTTAACTTGACAAAAACAGCTATTAAAGAACTGCCTTCATCATTTGGCAATTTGGTTCGGCTTCGGACCCTGCGTCTGAACATGTGCACTGATCTCGAGTCACTTCCAAACAGCATTGTTAATCTAAACCTTCTCTCGAAACTTGATTGTTCGGGGTGTGCCAAATTAACAGAAATCCCAAGTGACATAGATCGCTTGTCATTATTAGGGGAACTGTCACTTAATGAGAGCAGAATTGTGAACCTTCCAGAGAGCATTGCTCATCTTTCAGGCTTGAAATCACTTGATTTAAGTGATTGCAAAAAGCTTGAATGCATCCCACAGCTTCCACCGGTTCTAAAACAACTATTGGCATTTGATTGCCCCTCCATTAGAAGAGTGATGCCAAATTCACTTATTCAAATCCCATCAAATTCCGAAGAGGGTGTCTTCAAATTTCATTTCACCAATGGTCAACAACTGGATCCAGGTGCTCGTGCTAATATTGCGGATGATGCATGGCGTAGGATGACCGAGGAGGCATATAGGTCTGTGTTCTTTTGTTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTTTTCGTGGTGGGGGACATTCAGTAACTATAAATACAGATTCTCTAAATTTGCGCAGTGATAACAGGCTCATTGGTTTCGCTTTGTGTGTCGTTTTGGAATTGTTAGATACGAATGACATTGAAGATAGATATGGTTCTTTTACTTACAGTCTAAAATTTGAAACTGATGATGGCATGCACATTCTTCCCAACGATGATGAGTTAAGAGACCGGTTCTCTTGGAAGGATCGAGAGAGAATAGTTGATCAAGATCACACATTCCTGTGGAAATATAACTTGGAACCCGTAAGCATGAGCCTTATGCTCCGTCGTGCTCGCAGCTTCACTTTTGAGATCAGCCAATATGAAGATGGCCTTCCGATGCGACtacatttcaattcaattgTCAGAGTAAAATCAATTGTCACAATAAAAGAATGCGGAATATGCCCTCTTTATgccaaagtaaaaaataaaaatgctgTTGGGCATGATGTGTTTCTCAACTTCAGAGGGGAAGACACCCGTGACAACTTCATTAGTCACCTTTATGCAGAACTAGACAGGAAAAAGATTGAAACATATATAGATTACCGACTAGGCAGAGGCGAAGAGATTTCACCTGCACTGCACAGAGCAATAGAAGAATCAAAGATTTTTGTCCTCGTTTTCTCAGAAAACTATGCATTTTCATGTGAAAGGCTCAAACGGACAAAGGTTCTCCTCATTCTTGATGATGTGAACAATTCGGGtcaattaaaagatttaattggtGGGCACAGTAATTTTGGCCCGGGCAGTAGAATCATTGTGACCAGTAGAGACATGCAAGTGCTTAAGAATGCTGAAGCTGATGAAATATACGAAGTTAAGGAGTTGAATTTCCAAGATTCTCTAGAACTGTTCAGTTTAAATGCTTTTAAACAAAACCATCCAAAAGAAGATTATATGATTTTGTCAAGAAAGGTATTGAATTATGCTAAAGGGATTCCATTAGCTCTCAGGGTTTTGGGCTCATTGCTTCATTATAGAACAAAGGAAGCATGGGAAAGTGAGTTGCAAAAGTTGGAAAAGCTACCCAATCCTGAAATtctcaatatattaaaattaagttattatgGACTTGACGAGGAGCAGAAGGATATATTTCTTGACATAGCTTGCTTTTATAGAGGACATGCTGAGAATGTCGTCGCACAAACTCTGGGTAGCTGTGGTTTCAATGCCAACTTTGGCATGAATGTTCTCAAAGATAGGTGCCTAATATCCATTTTGGATCGTAGAATTGTGATGCATGATCTAATACAAGAAATGGGACAAGAAATTGTTCGTCGAGAATGTGTCAATAATCCTGGAAAACGCAGTCGATTGTGGAGGGTTCAGGAAATTTATCACGTTTTAAGAAAGAACAAGGGGACAGATGCGATACAGTGTATGTTGCTCGacatatgcaaaataaaaaaagttaaactacATGCTGAAACTTTCAAAAAGATGGACAATCTGAGGATGCTCCAGTTCTATACGCCTCCTGGCCATTGGAAGGACTCAAATGTGTTTCTTGAATCATCTCTTGAAAGTCTTCCGGATGCTTTAAAAATTCTTCGTTGGGATGGCTTCCCTCAGAAATCTTTGCCGCTGAACTTTTGCCCAGAAAATCTTGTTACACTCGAAATGCAACATTGCTGTCTGGAAGAACTTTGGGAACGAGATCAGTGTTTACCGAATTTGAAAAGGCTGGACCTGAGTTATTCTGGGAAACTAAAAAGAATACCGGACCTTTATCTGTCACCAAATATTGAAGAAATAATTCTGAGTGGCTGTGTAAGCTTGATTCAAGTTTACTCCAAAGGATTCCTCGGCAAGCTCAGttgtttatgtttaaatgattgTGTTGAGCTTACGAGTTTAACTATTCCGAGCAATATTCTATCGAGATCATCAGGATTAATTCTTCTTTACAATTGTCGCATGCTAGAAAAATTTTCAGTCAGTAATAGTCAATTTCCTCGTCCAGACGGTGGGCGCGCAGCAGCACCCCCTCCACCGCCACATCCCAAAGCTCCAGAACGTTCCAAAGCTCCATGTCCACCAtgtcctccacctccacctccacaatGTCTTCCACCTCCACCACGTCCGAAAGCTCCACCTCCACCGTGTCCTCCACCTCCACAGTgtcctccacctccaccatgtcctccacctccacctccaccataTCCACATGATCCTTCACCTCCAGTATGTCATTGTCCTCTACGTCCACTCTATGATTGTTTTCCAGCTCCACCATGTCCCAGAGCTCCAGAACTACCGTGGATTGGGGAATATTCCTCACATACTTTTGACGGATATGAAGTAGCGGCGAATAATATAGACTTACTATACGATATAGTGTTGAGCGAAGGTGTGTCCTCAATATTTCCAACTCTGAATAAGCTATGTTGGTTAGATCTCTGTAATTGTGAATCCCTTACAATCCTTCCATTTGACCTTTCTGAGTTGAAATTGCTAAAAGGACTTCGACTCCGTGGTTGCTCAAATTTGGTAAATTTTCCTGAAATTGAGGGCAAAATGGAAAATCTAACGGTGCTTATCTTAGACCGAACAGCAGTAAAGGCACTACCTTCATCCTTGTGCCATTTGGTGGGACTTGAAGAATTGAGCTTGCACAGCTGCACTAGTCTTGAGATTATTCCAACTTCCACTGGAAGTCTCAGCAAACTCTGCAGCATTGTTAATCTAAACCTTCTCTCTGAACTTGACTGTTCGGGGTGTGCCAAATTAACAGAAATCCCAAGTGACATTGGTCGCTTGTCATTATTAAGGGAATTGTCACTGCATGAGAGTGGAGTTGTGAACCTGCCTCAGAGCATTGCTCATCTTTCAAGCTTGAAATCACTTGATTTAAGTGATTGCAAAAAGCTTGAATGCATCCCACAGCTTCCACCAtttctaaaacaattattgGCATTTGATTGCCTATCCATTAGAAAAGTGATGCCAATTTCAAAGATTCAAATCCCATCTAATTCCAAAGAAGCTACCTTCAAATTTCATTTCACCAATAGTCTGCAACTAGATCCAAGTGCTCTTGTTAATATTGCGGATGATGCATGGCTTAGGATCACCGAGGATGCATATAGGTCTGTGTTCTTTTGTTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTAGTCGTGGCAAGGGATATTCAGTAACCATAAATAAAGATTCTCTAAATTTGTGCAATGATGACAGGATCTTTGGCTTTGCTTTGTGTGTCGTTTTCGGACTCTTAGGTATGGATGATACTGAAGGTAGATATGGTTCTTTTAGTTACAGATTAAAAGTTGAATCTGATGATGGCATATACATTCTTCCCGACCATGATGAGCTAAGAAACCATTTCTATTGGAAGGGTCGAGAGAGAACTGTTGATCAAGATCACACATTTCTGTGGAAATATAACTTGAAACCCACAAGCATGAGCCTTAAGCTGTGTCGTGCTCACAGCTTCACTTTTGAGATCAGCCAATATGATTATGGCTTTCCGAGGTGGCCAGATTTCAAATCAATTGCTGCAGTAAAAGAATGCGGAATATGCCCTCTTTATACCAATGAAAATGTGGATAATAATGCTGGTGCTGGTGACTATTCTGGCTTTCCTAGATTTTCAGAAAATGACATTGAAGAACCTAGTGGAAGCAAAGTTGCATAG 6525 0.388 MSGSSSSTVVSPPLIGHDVFLNFRGEDTRDSFVSHLRAELHRKNIKTFMDDRLGRGEEISPGLHKAIEESMIYVLIFSEDYASSTWCLDELTKILECNKRYGRNVIPVFYKVDPSNVRNQRGRYAEAFVKHERRFKDKMDKVHAWKAALTEASGRSGWVSQVTRPEYTLVAEIVKDILRKLNRSSISDHQGIIGIENHIARIQSLLHPESPAIRIIGIWGMGGIGKTTIASQIYHKLAVQFASSSLVLDGKKEIERHGIQHIRSKYLSELLEEDSTSSGLSFSHERLKRTKVLLVLDDVNNSGQLKDLIGGRGDFGQGSRIIVTSRDLQVLKNAEADEIYEIKEMNFQDSLKLFSLNAFKQNHPRETYMDLSIKILNYAKGIPLALKVLGSLLYGRTKEVWESELQKLEKLPDLEIFNVLKLSYDGLDEEQKDIFLDIACFYRGHEENVVAQTLGSCGFYAKIGMNVLKDRCLISILDGRIVMHDLIHGMGQEIVRQECVSNPGKRSRLWKVEEIYHVLRKIKGTDVIQCILLDICKIKEVELHAETFKKMDNLRVLQFYESSGYWNKSNVFLESFLESLPDGLKILRWDGFPQRSLPQNFCPENLVNLEMRRCQLEELWEGDQYLPNLKRLDLSYSSNLIRIQDLYLSPNIEEIILSDCFSLLQVYSSGFLSKLNCLFLNDCCASLESIPSSIGNLSKLCKLGLAYCVSLETLPSSIFKLKLTNLDLYGCSMLRTFPEILEPAETFAHVNLTKTAIKELPSSFGNLVRLRTLRLNMCTDLESLPNSIVNLNLLSKLDCSGCAKLTEIPSDIDRLSLLGELSLNESRIVNLPESIAHLSGLKSLDLSDCKKLECIPQLPPVLKQLLAFDCPSIRRVMPNSLIQIPSNSEEGVFKFHFTNGQQLDPGARANIADDAWRRMTEEAYRSVFFCFPGSAVPHWFPFRGGGHSVTINTDSLNLRSDNRLIGFALCVVLELLDTNDIEDRYGSFTYSLKFETDDGMHILPNDDELRDRFSWKDRERIVDQDHTFLWKYNLEPVSMSLMLRRARSFTFEISQYEDGLPMRLHFNSIVRVKSIVTIKECGICPLYAKVKNKNAVGHDVFLNFRGEDTRDNFISHLYAELDRKKIETYIDYRLGRGEEISPALHRAIEESKIFVLVFSENYAFSCERLKRTKVLLILDDVNNSGQLKDLIGGHSNFGPGSRIIVTSRDMQVLKNAEADEIYEVKELNFQDSLELFSLNAFKQNHPKEDYMILSRKVLNYAKGIPLALRVLGSLLHYRTKEAWESELQKLEKLPNPEILNILKLSYYGLDEEQKDIFLDIACFYRGHAENVVAQTLGSCGFNANFGMNVLKDRCLISILDRRIVMHDLIQEMGQEIVRRECVNNPGKRSRLWRVQEIYHVLRKNKGTDAIQCMLLDICKIKKVKLHAETFKKMDNLRMLQFYTPPGHWKDSNVFLESSLESLPDALKILRWDGFPQKSLPLNFCPENLVTLEMQHCCLEELWERDQCLPNLKRLDLSYSGKLKRIPDLYLSPNIEEIILSGCVSLIQVYSKGFLGKLSCLCLNDCVELTSLTIPSNILSRSSGLILLYNCRMLEKFSVSNSQFPRPDGGRAAAPPPPPHPKAPERSKAPCPPCPPPPPPQCLPPPPRPKAPPPPCPPPPQCPPPPPCPPPPPPPYPHDPSPPVCHCPLRPLYDCFPAPPCPRAPELPWIGEYSSHTFDGYEVAANNIDLLYDIVLSEGVSSIFPTLNKLCWLDLCNCESLTILPFDLSELKLLKGLRLRGCSNLVNFPEIEGKMENLTVLILDRTAVKALPSSLCHLVGLEELSLHSCTSLEIIPTSTGSLSKLCSIVNLNLLSELDCSGCAKLTEIPSDIGRLSLLRELSLHESGVVNLPQSIAHLSSLKSLDLSDCKKLECIPQLPPFLKQLLAFDCLSIRKVMPISKIQIPSNSKEATFKFHFTNSLQLDPSALVNIADDAWLRITEDAYRSVFFCFPGSAVPHWFPSRGKGYSVTINKDSLNLCNDDRIFGFALCVVFGLLGMDDTEGRYGSFSYRLKVESDDGIYILPDHDELRNHFYWKGRERTVDQDHTFLWKYNLKPTSMSLKLCRAHSFTFEISQYDYGFPRWPDFKSIAAVKECGICPLYTNENVDNNAGAGDYSGFPRFSENDIEEPSGSKVA 2174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3429 2174 Gene3D - 179 342 IPR027417 -
Ssu5g3429 2174 SMART till_3 1097 1213 IPR000157 GO:0007165
Ssu5g3429 2174 SMART till_3 16 155 IPR000157 GO:0007165
Ssu5g3429 2174 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 684 973 IPR044974 GO:0006952
Ssu5g3429 2174 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1098 1165 IPR044974 GO:0006952
Ssu5g3429 2174 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 683 IPR044974 GO:0006952
Ssu5g3429 2174 Pfam TIR domain 1098 1169 IPR000157 GO:0007165
Ssu5g3429 2174 Pfam TIR domain 17 190 IPR000157 GO:0007165
Ssu5g3429 2174 MobiDBLite consensus disorder prediction 1609 1631 - -
Ssu5g3429 2174 Gene3D Ribonuclease Inhibitor 517 661 IPR032675 -
Ssu5g3429 2174 SUPERFAMILY L domain-like 1739 1928 - -
Ssu5g3429 2174 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Ssu5g3429 2174 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1098 1165 - -
Ssu5g3429 2174 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 158 IPR035897 -
Ssu5g3429 2174 MobiDBLite consensus disorder prediction 1601 1631 - -
Ssu5g3429 2174 Gene3D Ribonuclease Inhibitor 1388 1610 IPR032675 -
Ssu5g3429 2174 Gene3D - 1096 1187 IPR035897 -
Ssu5g3429 2174 Gene3D - 15 178 IPR035897 -
Ssu5g3429 2174 PRINTS Disease resistance protein signature 379 393 - -
Ssu5g3429 2174 PRINTS Disease resistance protein signature 836 852 - -
Ssu5g3429 2174 PRINTS Disease resistance protein signature 286 300 - -
Ssu5g3429 2174 PRINTS Disease resistance protein signature 215 230 - -
Ssu5g3429 2174 SUPERFAMILY L domain-like 1364 1601 - -
Ssu5g3429 2174 Gene3D Ribonuclease Inhibitor 668 875 IPR032675 -
Ssu5g3429 2174 Gene3D Ribonuclease Inhibitor 1734 1936 IPR032675 -
Ssu5g3429 2174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1162 1320 IPR027417 -
Ssu5g3429 2174 SUPERFAMILY Toll/Interleukin receptor TIR domain 1098 1185 IPR035897 -
Ssu5g3429 2174 Gene3D - 1226 1310 IPR042197 -
Ssu5g3429 2174 Gene3D - 344 428 IPR042197 -
Ssu5g3429 2174 ProSiteProfiles TIR domain profile. 1096 1225 IPR000157 GO:0007165
Ssu5g3429 2174 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1744 1956 IPR044974 GO:0006952
Ssu5g3429 2174 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1164 1600 IPR044974 GO:0006952
Ssu5g3429 2174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 438 IPR027417 -
Ssu5g3429 2174 Pfam NB-ARC domain 196 410 IPR002182 GO:0043531
Ssu5g3429 2174 Pfam NB-ARC domain 1166 1292 IPR002182 GO:0043531
Ssu5g3429 2174 SUPERFAMILY L domain-like 482 878 - -
Ssu5g3429 2174 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 684 973 - -
Ssu5g3429 2174 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1744 1956 - -
Ssu5g3429 2174 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1164 1600 - -
Ssu5g3429 2174 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 683 - -
Ssu5g3429 2174 Pfam C-JID domain 931 1089 IPR045344 -
Ssu5g3429 2174 Pfam C-JID domain 1990 2143 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3429 Ssu-Chr5 84713850 84738143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3429 696 869 WRKY Transcription Factor Family AT4G12020 32.571 7.11e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3429 - - vra:106770428 1146.34