Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3428 ATGGCTGGCACCGAACACAGACTAAGCTTGGATCCTGAGAAACAGAACCTTCTCAACCACCACACCGAGAAGCACTTCACCGCCGGCGAAGTCGTCCGCGACATCATCATCGGCGTTTCCGACGGCCTCACCGTCCCCTTCGCCCTCACCGCCGGCCTCTCCGGCACCAATGCCAGCTCCTCCATTGTTCTCACCGCCGGCATAGCCGAAGTCGCCGCCGGCGCCATCTCCATGGGTCTCGGCGGTTATTTGGCAGCAAAAAGTGAAGCTGATCATTACGCGAGAGAATTGAAAAGGGAGCAGGAAGAAATCATCGCCGTGCCAGAAACTGAAGCGGCAGAGGTAGCAGAAATACTGGCTCAGTATGGGGTAGAGGAACATGAATATGAACCTGTGGTGAATGCCCTCAGAAAGAAGCCTCAAGCATGGCTTGATTTCATGATGAAATTTGAGCTGGGACTAGAGAAGCCAGATCCAAGGAGAGCATTGCATAGTGCAATGACAATTGCCATTGCTTACATATTGGGTGGGCTTGTTCCTCTCGCTCCTTACATGTTCATTTCAAGGGTAGAAGAGGCAGTTGTGTTTTCAGTCGTGGTTACCTTGGTTGCATTGATGATTTTTGGCTATGCCAAGGGACACTTCACGGGCAATAAACCTTTCAGGAGTGCTTTGGAAACGGCTCTAATTGGTGCCATCGCCTCCGCAGCTGCTTTTGGTATGGCCAAGGCTTTCAATGCATAG 744 0.5188 MAGTEHRLSLDPEKQNLLNHHTEKHFTAGEVVRDIIIGVSDGLTVPFALTAGLSGTNASSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIIAVPETEAAEVAEILAQYGVEEHEYEPVVNALRKKPQAWLDFMMKFELGLEKPDPRRALHSAMTIAIAYILGGLVPLAPYMFISRVEEAVVFSVVVTLVALMIFGYAKGHFTGNKPFRSALETALIGAIASAAAFGMAKAFNA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3428 247 Coils Coil 83 103 - -
Ssu5g3428 247 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 11 246 IPR008217 GO:0005384|GO:0030026
Ssu5g3428 247 Pfam VIT family 32 242 IPR008217 GO:0005384|GO:0030026
Ssu5g3428 247 CDD CCC1 11 245 - -
Ssu5g3428 247 PANTHER VACUOLAR IRON TRANSPORTER 1.1-LIKE 11 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3428 Ssu-Chr5 84708241 84710494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3428 1 243 Nodulin-like Gene Family AT3G43660 24.590 7.88e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3428 K22736 - gmx:100793585 389.037