Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3417 ATGGTGACGAGAAGAAAGCTTCTGAACTTGTTATTATCAACCCTAAACGTTTCTCAGTTAGTTCCGCACCACGCCAATGCATTTCAACACCCCTTTTCCAAAACCGTTAGGGTTTACGGAACCCAAGCATCATCGAAGCTCCCGGAATACGAGATGCCATCGGTGACATGGGGCGTGATCCAGGGCCGCAAGGAGAAGCTCGTTTCGCGAGTAATCATCTTCGACTACCTCAAGGGTTTGGGAATCGTCCCGGACGAGTTGCACGACCTCGAGCTTCCTTCCACCGTCGACGTCATGCGGGAGCGCGTCGAGTTTCTCCAAAAATTGGGTCTCACCGTGGACGACATCAACAATTACCCTCTAATATTAGGCTGCAGCGTCAGAAAAAACATGATCCCCGTGTTGGGGTACTTGGAAAAAATTGGGATTGCCAGGCCCAAGCTTGGGGAATTCGTTAAGAATTACCCGCAGGTGTTGCATGCTAGTGTCATTGTTGAGCTTGCTCCCGTGGTTAAGTTCCTCAGGGGGCTTGATGTGGAGAAAGATGATATTGGGTATGTGTTGCAAAAGTACCCTGAGCTTCTAGGGTTCAAGCTTGAGGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATTGGTCCAATGGTGACTCAGTATCCTTATTTTTTAGGGATGAGAGTTGGGTCTGTGATAAAGCCAATGATTGATTACTTGGTCAGTTTAGGGCTGCCGAAGAAGGTTTTGGCTAGGATGTTGGAGAAGAGAGCTTATATTCTTGGCTATGATCTTAAGGAAACTGTGAAACCAAATGTGGAATGTTTGATTAGTTTTGGTGTGAGGAGGGAGTGTTTGGCTTCGGTTGTTGCTCAATATCCGCAGATTCTTGGGCTGCCTCTTAAGGCTAAGTTGTCCTCGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGGTTGACCCTGAAGGGTTTGCACGTGTGGTGGAGAAGATGCCACAGGTGGTTAGCCTCCACCAACATGTGATTACGAGGCCGGTTGAGTTCCTCCTTGGGAGGACGATACCGGCACAGGATGTGGCCGGTATGGTGATCAAGTGTCCTCAGTTGGTGGCGCTGAGAGTTGAGCTCATGAAGAACAGCTATTACTTCTTCAAGAGTGAGATGGGGAGGCCCTTGAAAGAGCTTGCGGAATTCCCGGAGTACTTTACTTATAGTTTGGAGTCCAGGATCAAACCCAGATACCAGAGGCTGAAGAGTAAAGGGATAAGGTGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCATTACATTGAAACTGAAAGTGTAGGTCCGAGATTCTGTATGGGAGGGAAATTAGAGCTACCAGGGAATGACATGGTGTCAGATGAGGAAGAGGACAGTGATGATGAAGTATTATACAGACGAACTGTTTCTCTTTAg 1482 0.4723 MVTRRKLLNLLLSTLNVSQLVPHHANAFQHPFSKTVRVYGTQASSKLPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIVPDELHDLELPSTVDVMRERVEFLQKLGLTVDDINNYPLILGCSVRKNMIPVLGYLEKIGIARPKLGEFVKNYPQVLHASVIVELAPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGSVIKPMIDYLVSLGLPKKVLARMLEKRAYILGYDLKETVKPNVECLISFGVRRECLASVVAQYPQILGLPLKAKLSSQQYFFSLKLKVDPEGFARVVEKMPQVVSLHQHVITRPVEFLLGRTIPAQDVAGMVIKCPQLVALRVELMKNSYYFFKSEMGRPLKELAEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPGNDMVSDEEEDSDDEVLYRRTVSL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3417 493 Pfam mTERF 135 443 IPR003690 GO:0003690|GO:0006355
Ssu5g3417 493 Gene3D Transcription termination factor 3, mitochondrial 99 238 IPR038538 -
Ssu5g3417 493 Gene3D Transcription termination factor 3, mitochondrial 239 453 IPR038538 -
Ssu5g3417 493 PANTHER CGI-12 PROTEIN-RELATED 41 476 IPR003690 GO:0003690|GO:0006355
Ssu5g3417 493 PANTHER EXPRESSED PROTEIN 41 476 - -
Ssu5g3417 493 SMART mt_12 185 216 IPR003690 GO:0003690|GO:0006355
Ssu5g3417 493 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Ssu5g3417 493 SMART mt_12 330 360 IPR003690 GO:0003690|GO:0006355
Ssu5g3417 493 SMART mt_12 365 396 IPR003690 GO:0003690|GO:0006355
Ssu5g3417 493 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Ssu5g3417 493 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Ssu5g3417 493 SMART mt_12 221 252 IPR003690 GO:0003690|GO:0006355
Ssu5g3417 493 SMART mt_12 397 428 IPR003690 GO:0003690|GO:0006355
Ssu5g3417 493 SMART mt_12 293 325 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3417 Ssu-Chr5 84529284 84530765 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu5g3417 mTERF 3.7e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3417 K15032 - gmx:100809590 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3417 5 84529284 84530765 Ssu5g3417 5 84529284 84530765 ECH