Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3415 ATGAAGATCATGCCCGTCCAGAAGCAGACCCGCGCCGGTCAGCGAACCCGCTTCAAGGCCTTCGTCGTCGTCGGCGACGGCAACGGCCACGTTGGCCTCGGCGTCAAGTGCAGCAAGGAGGTCGCCACCGCCATCCGCGGCGCCATCATCTTGGCCAAGCTCTCCGTCATTCCTGTCAGGAGAGGCTACTGGGGTAACAAGATCGGAAAGCCTCACACCGTTCCCTGCAAGGTTACCGGAAAGTGCGGTTCCGTCACCGTTCGCATGGTCCCCGCCCCTCGTGGGTCGGGAATCGTGGCGGCTAGGGTTCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGAAGATGTCTTCACCTCCTCCAGGGGATCCACTAAGACTCTTGGAAATTTCGTCAAGGCTACTTTTGATTGTCTGCTGAAAACCTACGGTTTTCTGACACCTGACTTCTGGAGGGAGACTCGCTTCTCCAAATCTCCATTCCAAGAGTACACAGATCTATTAGCAAAGCCAACAGGAAAGGCCTTGATCCTGGAGGAGGAAAGGGTGGAGGCTTGA 555 0.5676 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPDFWRETRFSKSPFQEYTDLLAKPTGKALILEEERVEA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3415 184 TIGRFAM uS5_euk_arch: ribosomal protein uS5 1 156 IPR005711 GO:0003735|GO:0006412|GO:0015935
Ssu5g3415 184 SUPERFAMILY dsRNA-binding domain-like 2 61 - -
Ssu5g3415 184 Pfam Ribosomal protein S5, N-terminal domain 1 60 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu5g3415 184 Gene3D - 59 151 IPR014721 -
Ssu5g3415 184 ProSiteProfiles S5 double stranded RNA-binding domain profile. 1 59 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu5g3415 184 PANTHER RIBOSOMAL S SUBUNIT 1 178 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu5g3415 184 SUPERFAMILY Ribosomal protein S5 domain 2-like 72 152 IPR020568 -
Ssu5g3415 184 Pfam Ribosomal protein S5, C-terminal domain 80 151 IPR005324 GO:0003735|GO:0005840|GO:0006412
Ssu5g3415 184 ProSitePatterns Ribosomal protein S5 signature. 13 45 IPR018192 -
Ssu5g3415 184 Gene3D - 1 58 - -
Ssu5g3415 184 PANTHER - 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3415 Ssu-Chr5 84514293 84515655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3415 1 168 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 94.643 8.12e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3415 K02981 - gmx:100797105 365.54