Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3404 ATGGTTAGACCATACACGTACCCCACGACATGCAAGAAGAGGCTCTTCTCCGTGTCTCCAAGAAAGCTCTTAACATCAGAACGCCGAGGCATTTGCGCTCCTTCTCGTATATGGCCATTGATGTTGTCCCAGAACACGACCATACCCCACCACTGCGACGACCAACCCTTCGAGTTTTCCAAGGTTGATCCCAAACTGCTCAGTGACATGGTAAAGGACAAAAGGCTCGACTCTCTCACCCAGCTTGGAGGCGTCAGAGAACTGGCCACACTTCTTGAAACCGACGTCCAGCGTGGCATCGGAGGCAACCAGGCTGACATTGATCGCCGGAAACGTGTCCTTGGCGTGAACGTGTTCCAGAAACCTCCGTCCAgaggttttctttcttttgttcttgAAGCCTTTAAAGATGCCACTATTATTATCCTTTTGGTTTGTGCTGTGCTTTCCCTTGGCTTTGGGATCAAGCAACATGGCTGGAAGGACGGGTGGTACGATGGAGGTAGCATCGTGTTGGCGGTTATTCTCGTTATTGTTGTCTCTTCCGTGAGCAACTTTAAACAATCTAGACAATTCCAGAAGCTTTCTGCCAAGAGTAACAACATAGGAGTGGAGGTAGTACGAGGTGGCAGACGCCAAAGCGTGTCGATCTTTGAGGTGGTGGTTGGAGACATTGTGCACTTGAAGATTGGGGATCAGGTTCCGGCGGACGGGTTGTTTCTGGAGGGGCATTCGCTGAAGGTGGACGAATCTAGCATGACGGGGGAGAGTGATCACGTGCATGTGAACGGTGACAGGAACCCTTTCTTGCTCTCTGGCACAAAGGTCACGGATGGTTTTGCGCACATGATGGTTACTTCTGTGGGTGTGAACACCGCGTGGGGCGAAATGATGGGTTCCATAACGAGAGAGCTTGATGAGGAGACACCTCTGCAAGCACGTCTCAACAAGTTGACTTCTGCTATCGGCGAGGTTGGGTTGTTGGTGGCTGCTCTTGTTCTCGTGGTCTCCATGATACGTTACTTCACGGGAAGCACTAGAGACGAGATGGGGAACCGGGAATTCGTTGGAAGGAAGACTAAGTTTGATGATGTTATGAATGCGGTTGTGGGGATTGTTGCCGCGGCGGTGACAATTGTGGTGGTGGCGATTCCGGAAGGGTTGCCGCTTGCTGTTACTCTCACTCTGGCTTATTCCATGAAGAAAATGATGAGGGATAATGCCATGGTTCGGAGAATCTCTGCTTGCGAGACTATGGGGTCGGCAACGACGATTTGCACCGATAAAACAGGCACGCTTACACTGAATGAGATGAAGGTGACTGAGGTTTGGGTGGGGAAAAAGGCAATAGCAGAAGATGGGTATTTGGCACCCAGTTTAGACCAATTGTTGAAAGAAGGAATTGGGTTAAATACCACTGGAAGCGTTTACCGACCCCAACAAACTTCGCTGCCCGAAATTTCAGGTAGTCCAACTGAGAAAGCGTTGCTTACCTGGGCGGTGGTGGATTTGGGCATGGACATTGATGAAGTGAAGCGGCATTGTGAAATAATTCAAGTGGAGACGTTCAACTCTGAGAAAAAGAGAAGTGGGATTCTGATGAGGGAGAAGAGAGGAAGCAAGAGGATCCATACGCACTGGAAGGGTGCTGCTGAGATGGTATTGGCCATGTGTTCAAATTATTATGACCACACAGGGGAAATCATGATCATGGATGATGGAGAAAGGGTTCAAATTGAGAACATTGTCAAGGGCATGGCTACCAAAAGTTTGCGGTGCATTGCTTTTGCCCAAAAGAGCTCCAACGGGCGGGTGTACTTTGAAAAGCTTGAAGAGACAGGACTAACATTGTTGGGGATACTTGGCTTGAAAGACCCTTGTAGGCCTGGAGTTGAAGCAGCTGTTGAGTCCTGCAAGAATGCTGGAGTGAAGATCAAGATGATCACGGGAGATAATGTGCATACAGCAAGGGCCATAGCCTCTGAATGTGGGATTCTTGGCCCTAATGAAGAATTGGATGAAGCAGCAGTTGTTGAAGGGTTTCAATTCAGAAATTACTCACCTGAGGAGAGAATGGATAAGATTGACAGAATTAGAGTCATGGCCAGATCATCTCCATTTGACAAGCTTCTGATGGTTCAATGTTTAAAGCAGAAGGGTCATGTGGTGGCGGTCACAGGTGATGGCACAAATGATGCACCTGCTCTCAAAGAAGCGGACATTGGACTTTCCATGGGAATACAAGGCACTGAAGTGGCAAAGGAGAGCTCAGATATTGTTATCCTTGATGACAATTTCTCTTCCGTGGTTACAGTTCTGCGGTGGGGAAGATGTGTGTACACAAACATCCAGAAGTTCATTCAGTTCCAGCTCACAGTTAACGTTGCTGCACTTGTCATCAACTTTGTAGCTGCTGTTTCATCCGGTAAAGTGCCTCTTACAGCTGTCCAGCTTTTGTGGGTAAACCTGATAATGGATACTCTTGGAGCTTTGGCCTTGGCCACTGAGCAACCCACTAATGATCTCATGAAGATGCCACCGGTAGGAAGAGTTGAGCCACTTATAACTAGAGTTATGTGGAGAAACCTCATTTCACAGGCATTGTATCAAGTGCTTGTCTTGTTGATTTTACAATTCAAGGGAAGATCAATCTTTGACGTCAGTGAGAAGGTGAAGAACACCCTTATTTTCAATGCTTTTGTCCTCTGCCAAGTCTTCAATGAGTTCAATGCAAGGAAGCTGGAGAAGAAGAACATCTTTGAGGGACTTGGTAAGAATAAGTTGTTCATAGTAATTGTGGGCCTAACTGTAGCTCTTCAGCTAGTGATGGTTgagtttttgaagaagtttgCCAATACCGAGAGATTGACTTGGGAGCAATGGGGTGTCTGTGTTGGCATTGCAGCTTTGTCTTGGCCGATTGGTCTGCTGGTGAAGTGTATCCCAGTTGTTCCCAACAAGTAG 2964 0.4713 MVRPYTYPTTCKKRLFSVSPRKLLTSERRGICAPSRIWPLMLSQNTTIPHHCDDQPFEFSKVDPKLLSDMVKDKRLDSLTQLGGVRELATLLETDVQRGIGGNQADIDRRKRVLGVNVFQKPPSRGFLSFVLEAFKDATIIILLVCAVLSLGFGIKQHGWKDGWYDGGSIVLAVILVIVVSSVSNFKQSRQFQKLSAKSNNIGVEVVRGGRRQSVSIFEVVVGDIVHLKIGDQVPADGLFLEGHSLKVDESSMTGESDHVHVNGDRNPFLLSGTKVTDGFAHMMVTSVGVNTAWGEMMGSITRELDEETPLQARLNKLTSAIGEVGLLVAALVLVVSMIRYFTGSTRDEMGNREFVGRKTKFDDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATTICTDKTGTLTLNEMKVTEVWVGKKAIAEDGYLAPSLDQLLKEGIGLNTTGSVYRPQQTSLPEISGSPTEKALLTWAVVDLGMDIDEVKRHCEIIQVETFNSEKKRSGILMREKRGSKRIHTHWKGAAEMVLAMCSNYYDHTGEIMIMDDGERVQIENIVKGMATKSLRCIAFAQKSSNGRVYFEKLEETGLTLLGILGLKDPCRPGVEAAVESCKNAGVKIKMITGDNVHTARAIASECGILGPNEELDEAAVVEGFQFRNYSPEERMDKIDRIRVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFSSVVTVLRWGRCVYTNIQKFIQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMKMPPVGRVEPLITRVMWRNLISQALYQVLVLLILQFKGRSIFDVSEKVKNTLIFNAFVLCQVFNEFNARKLEKKNIFEGLGKNKLFIVIVGLTVALQLVMVEFLKKFANTERLTWEQWGVCVGIAALSWPIGLLVKCIPVVPNK 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3404 987 Pfam E1-E2 ATPase 204 405 - -
Ssu5g3404 987 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Ssu5g3404 987 PRINTS P-type cation-transporting ATPase superfamily signature 249 263 - -
Ssu5g3404 987 PRINTS P-type cation-transporting ATPase superfamily signature 641 651 - -
Ssu5g3404 987 PRINTS P-type cation-transporting ATPase superfamily signature 619 630 - -
Ssu5g3404 987 PRINTS P-type cation-transporting ATPase superfamily signature 726 745 - -
Ssu5g3404 987 PRINTS P-type cation-transporting ATPase superfamily signature 750 762 - -
Ssu5g3404 987 SFLD p-type atpase 408 779 IPR044492 -
Ssu5g3404 987 SUPERFAMILY Calcium ATPase, transduction domain A 204 300 IPR008250 -
Ssu5g3404 987 PRINTS H+-transporting ATPase (proton pump) signature 579 597 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g3404 987 PRINTS H+-transporting ATPase (proton pump) signature 758 783 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g3404 987 PRINTS H+-transporting ATPase (proton pump) signature 726 742 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g3404 987 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Ssu5g3404 987 Gene3D - 436 626 IPR023299 GO:0000166
Ssu5g3404 987 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 432 631 IPR023299 GO:0000166
Ssu5g3404 987 SUPERFAMILY HAD-like 424 831 IPR036412 -
Ssu5g3404 987 Gene3D - 103 302 - -
Ssu5g3404 987 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 55 983 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu5g3404 987 Pfam haloacid dehalogenase-like hydrolase 423 740 - -
Ssu5g3404 987 Pfam Cation transporting ATPase, C-terminus 811 980 IPR006068 -
Ssu5g3404 987 Pfam Cation transporter/ATPase, N-terminus 83 150 IPR004014 -
Ssu5g3404 987 SFLD Haloacid Dehalogenase 408 779 - -
Ssu5g3404 987 Gene3D - 423 771 IPR023214 -
Ssu5g3404 987 SMART Cation_ATPase_N_a_2 78 155 IPR004014 -
Ssu5g3404 987 Gene3D - 133 974 - -
Ssu5g3404 987 PANTHER CALCIUM-TRANSPORTING ATPASE 58 974 - -
Ssu5g3404 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 370 453 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g3404 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 697 808 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g3404 987 PANTHER CATION TRANSPORTING ATPASE 58 974 - -
Ssu5g3404 987 SUPERFAMILY Calcium ATPase, transmembrane domain M 83 983 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3404 Ssu-Chr5 84328333 84331333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3404 62 983 Primary Pumps ATPases AT3G63380 68.324 0.0 1228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3404 K01537 - gmx:100784119 1573.14