Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3402 ATGGCAGACGTTGAGGTCGATGTCGCAGCCGGAGGGTTGCCGAAGAAAAGAACATTCAAGAAGTTTAGTTTCAGGGGCGTGGATCTCGACGCGCTTCTCGACATGTCCACTGATGAGCTCGTGAAGCTGTTCAGTGCTCGTGCTCGTAGAAGGTTCCAGAGAGGTCTCACCAGAAAGCCCATGGCCCTGATTAAGAAGCTCCGCAAAGcgAAAAGGGAGGCTCCACCAGGTGAGAAGCCAGAGCCAGTCCGCACTCACCTCCGCAACATGATTATTGTCCCTGAGATGATTGGTAGCATTATTGGAGTATACAATGGCAAGACTTTTAACCAGGTTGAAATTAAACCAGAGATGATTGGGCATTATCTGGCAGAGTTCTCTATTTCATACAAACCTGTTAAGCACGGAAGACCTGGTATTGGTGCTACGCACTCATCCAGGTTTATTCCTCTTAAGTGA 459 0.4837 MADVEVDVAAGGLPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3402 152 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Ssu5g3402 152 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 11 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ssu5g3402 152 TIGRFAM uS19_arch: ribosomal protein uS19 19 152 IPR005713 GO:0003735|GO:0006412|GO:0015935
Ssu5g3402 152 Gene3D 30s Ribosomal Protein S19; Chain A 10 152 IPR023575 GO:0003735|GO:0005840|GO:0006412
Ssu5g3402 152 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ssu5g3402 152 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ssu5g3402 152 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ssu5g3402 152 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Ssu5g3402 152 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ssu5g3402 152 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ssu5g3402 152 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 2 152 - -
Ssu5g3402 152 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3402 Ssu-Chr5 84305245 84306535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3402 1 152 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.158 9.77e-94 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3402 K02958 - gmx:100499657 295.434