Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3397 ATGGTACGAAGTCAACCCCGAGCTTCTGGACATTCTTCTTCTGTTCTGTGCTTACGagAATTTGGGTTTTCAGCCATGGGCGACATGAAAGACAAGGTGAAGGGGTTCATGAAGAAAGTCAACAACCCTTTCTCCTCTTCATCATCTGGCAAATTCAAGGGCCAAGGTAGAGTCCTGGGTTCTTCTTCTACACCCGCTAATTCCAATCCTACCCCTCGCCCCATTCCGACGCAGAACCCTAATTCCAAACCCACTTCGGCCACAACGAATCCCAAACCCTCGCCCCAGAGAACGGAGCACAATAGAAGCACCGAGAAGGCTCGCAAAGATGTTGATGGGTTTGACCCTTTTGATTCTCTGGTCACTAATTCCAATAGATCACAAAATGGATATTCACTGAATGTGTATGAATGCCCCATTTGTAAACAACCCTTCAGATCCGAAGAAGAGGTGTCTGCACACGTGGATGGTTGTTTGAGTAACCCTGTTGAGCGTGGAGGTGATGGTGGAATTGGAAATGGGGTCTCAGAGAGTGAGGCTGGGTCTAATACTAATAGCGAATTGGAGGTTTGTGTTGGTACTTATATTTCAGGGAAGCCATCTGAGGGATCAGTTGATGTTGTTCTGAAACTGTTGAGGAATATTGGTAGGGAACCGGAGAATGTGAAGTTTAGGAGGATCAGGATGAATAATCCGAAGATAAAAGAGGCTGTTGGTGATGTTGCAGGGGGAGTCGAGTTGCTGAGTTTCGTAGGGTTTGAACTCAGGGAAGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCCACAGAGGAgcaaataaatttgattaagaAAGCAATAGTGTTGCTGGAATCACAACTTGCACAACAAGGACCTCCGAAGAGGGAGGATTCAGCGTCTGCAACTTCTGCTGAGATGGGTGCGAAGGCTGAACCAAGCCGGTCGACAGACAGGTGA 960 0.4688 MVRSQPRASGHSSSVLCLREFGFSAMGDMKDKVKGFMKKVNNPFSSSSSGKFKGQGRVLGSSSTPANSNPTPRPIPTQNPNSKPTSATTNPKPSPQRTEHNRSTEKARKDVDGFDPFDSLVTNSNRSQNGYSLNVYECPICKQPFRSEEEVSAHVDGCLSNPVERGGDGGIGNGVSESEAGSNTNSELEVCVGTYISGKPSEGSVDVVLKLLRNIGREPENVKFRRIRMNNPKIKEAVGDVAGGVELLSFVGFELREENGETWAVMEVPTEEQINLIKKAIVLLESQLAQQGPPKREDSASATSAEMGAKAEPSRSTDR 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3397 319 Pfam PUB domain 202 276 IPR018997 -
Ssu5g3397 319 MobiDBLite consensus disorder prediction 98 115 - -
Ssu5g3397 319 CDD PUB 196 286 - -
Ssu5g3397 319 SMART PGNneu 203 270 - -
Ssu5g3397 319 MobiDBLite consensus disorder prediction 80 97 - -
Ssu5g3397 319 Gene3D - 196 286 - -
Ssu5g3397 319 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 26 313 - -
Ssu5g3397 319 MobiDBLite consensus disorder prediction 40 68 - -
Ssu5g3397 319 MobiDBLite consensus disorder prediction 39 128 - -
Ssu5g3397 319 MobiDBLite consensus disorder prediction 289 319 - -
Ssu5g3397 319 Gene3D Classic Zinc Finger 132 163 - -
Ssu5g3397 319 SUPERFAMILY PUG domain-like 201 287 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3397 Ssu-Chr5 84245360 84247982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3397 26 315 C2H2 Transcription Factor Family AT2G01650 50.000 3.43e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g3397 PUB 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3397 K14011 - gmx:100779271 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3397 5 84245360 84247982 Ssu5g3397 5 84245360 84247982 ECH