Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3385 ATGGCAATGGCGACAATTGGAGAGGAGGAAATGCAGAGGTCTATGGAGAAGGAGCCTAAAGCTGCTAAGTTGACAGTCTTTTATGCTGGGCAAGAAGTTGTGTTCAATGATTTTCCTGTTGATAAAGTGGAGGAGATAATGTCATTGGCCAGCAAGGGAATATCTTATATCCTAAGGCCAGAACTCCTCTGCATATGCCCACACTCAGAACCAGCAAGGGAATCATCTTTCAATTATTCCTAA 243 0.4321 MAMATIGEEEMQRSMEKEPKAAKLTVFYAGQEVVFNDFPVDKVEEIMSLASKGISYILRPELLCICPHSEPARESSFNYS 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3385 80 ProSiteProfiles Tify domain profile. 17 52 IPR010399 -
Ssu5g3385 80 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 54 IPR040390 -
Ssu5g3385 80 SMART tify_2 17 52 IPR010399 -
Ssu5g3385 80 Pfam tify domain 18 51 IPR010399 -
Ssu5g3385 80 PANTHER PROTEIN TIFY 10A 10 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3385 Ssu-Chr5 84028111 84029311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3385 10 58 Tify Gene Family AT1G19180 48.980 2.13e-11 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu5g3385 tify 9.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3385 K13464 - gmx:100527510 72.7886