Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3377 ATGTTCAAAATTGCATTTGTTTGCTTTGTTTCTGCCTTGTTTCTGTGTTTCACCACTACCTCTGGCAGCCACAACACATCATCCTCAAAAACTTGTCCCACTTCCAGCTGCAGAAATGGACCTAACATCAGTTATCCTTTTTGGCTGTCCCAAGGCTCCCCTCCTGACCAATATTGCGGTTACCAAGAATTTGGCCTTATTTGTGACCATGGTCGCACCGTTTTTTCTCTACCCCCCGGATTATACTATTACGTAGAAGATATAGACTACGAAAACCATAGTCTTAAGCTCGTTGATCATGACACCGCAAACCAAACTTGTCCAAGGGCACTTCACAAGGTTCCCTTGGGCAACCTACCGCTTTCTCACTCCCCCTTGAACTTAGACCTTAGCTTTTACTACAACTGCAGTCACTACCCTTCTGGTGCGTCCTCTATCAAGTGTCTCAGCTCTGGAGCAAACGAGTCTTTTGTGTTTCTGACGGGGAACGAGACCAAAGGTTTTGACTGGTCGGGGAACTGCCAGGCAAACGTTGTGGTGACAGTGTTGAAGGACGAGATTACAAGTGACCATGGCTTGATGAACGAGTATGCCGGGGCCATGAATGAAGGGTTCGTGCTTGAATGGCAAACAGCTGCGAATTGCGCCGAGTGCGAGGCTAGTAATGGAGTTTGTGGCTACAGTAACACCAGGAAGGAGATGCTGTGCTTTTGCAAGGATGGCAGTACAAGAAGAAACAAATGTGACGCAGGGGGGAGCAGCACCGGTTTGTCAAGATTAACTATAGGTTTAATAGCTGGAGGAATTGGATTCGGAGTACTGCTGAAATGCATCCTACTTTTCACTTATAGACGTAAGTTATCACCAATTGTGTCAGAAATTTGGAAGGCCAAAAAGATTGATCAAGACTTTGAGGCCTTCATCAGAAATAATGGACCTCTGCCCATAAAAAGATACTCATATTCAGAGATCAAGAAAATGACCAATTCTTTTGAATCCAAACTGGGACAAGGTGGTTATGGTGTAGTGTATAAAGGAAATCTAAGCAACAACTCTAGCAACAACTCTCCTGTGGCTGTGAAGGTGCTGAAAGCTTCCAAAGGGAACGGGGAAGAATTTATCAACGAGGTTGTAAGCATAAGTAGAACGTCCCATGTAAATGTTGTTAATCTCCTTGGTTTTTGTCTTGAAGGTCAGAAGAAAGCCCTTGTCTACGATTTTATGCCCAATGGATCACTTGAAAAGTTTATACCCAAGAAGAATTTTGAAACCAACCCACCTTTGAGTTGGGAAAGATTTCACCGCATTGCTGAAGGGATAGCTAAAGGACTGGAGTACTTGCATAGAGGGTGCAACACTCGGATATTACATTTTGACATAAAACCAAGCAACATCCTTTTGGACAAAAATTTCTGTCCCAAAATCTCTGATTTTGGGATGGCCAAGCTCTGCTCAGAAACAAAAAGTATCATATCTATGTATGGTGCTAGAGGGACAGTAGGGTATATAGCTCCAGAAGTGTGGAACAGAAACTTTGGAGGAGTGTCATATAAGTCTGATGTGTATAGTTACGGAATGATGATTTTGGAAATGGTTGGAGGAAGGCAAAATATCAGCATTGAAGCAAGTCACTCCAGTGAGACATATTTTCCTCATTGGATATACAAGCATGTTGAGGTGGGCAGCAATGAAGCATGGAATGAACGTATGACCACAGAGGAAAAtgaaatttgtaagaaaatgatTATTGTGGGATTGTGGTGCATACAGACTATCCCATCTGATAGGCCTCCTAGGAGTAGGGTGGTTGAAATGTTAGAAGGAAGCATAGATCAGTTGCAAATTCCACCAAAGCCATTCATATTTACTCCTATGAAAACCGAAGTGGATATTTGCACTACTAGTAGCAGTGATTGA 1917 0.4272 MFKIAFVCFVSALFLCFTTTSGSHNTSSSKTCPTSSCRNGPNISYPFWLSQGSPPDQYCGYQEFGLICDHGRTVFSLPPGLYYYVEDIDYENHSLKLVDHDTANQTCPRALHKVPLGNLPLSHSPLNLDLSFYYNCSHYPSGASSIKCLSSGANESFVFLTGNETKGFDWSGNCQANVVVTVLKDEITSDHGLMNEYAGAMNEGFVLEWQTAANCAECEASNGVCGYSNTRKEMLCFCKDGSTRRNKCDAGGSSTGLSRLTIGLIAGGIGFGVLLKCILLFTYRRKLSPIVSEIWKAKKIDQDFEAFIRNNGPLPIKRYSYSEIKKMTNSFESKLGQGGYGVVYKGNLSNNSSNNSPVAVKVLKASKGNGEEFINEVVSISRTSHVNVVNLLGFCLEGQKKALVYDFMPNGSLEKFIPKKNFETNPPLSWERFHRIAEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKNFCPKISDFGMAKLCSETKSIISMYGARGTVGYIAPEVWNRNFGGVSYKSDVYSYGMMILEMVGGRQNISIEASHSSETYFPHWIYKHVEVGSNEAWNERMTTEENEICKKMIIVGLWCIQTIPSDRPPRSRVVEMLEGSIDQLQIPPKPFIFTPMKTEVDICTTSSSD 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3377 638 PANTHER - 15 636 - -
Ssu5g3377 638 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 636 IPR045874 GO:0004672
Ssu5g3377 638 Gene3D Phosphorylase Kinase; domain 1 308 407 - -
Ssu5g3377 638 ProSitePatterns Protein kinases ATP-binding region signature. 335 361 IPR017441 GO:0005524
Ssu5g3377 638 Pfam Protein tyrosine and serine/threonine kinase 331 605 IPR001245 GO:0004672|GO:0006468
Ssu5g3377 638 ProSiteProfiles Protein kinase domain profile. 329 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3377 638 Gene3D Transferase(Phosphotransferase) domain 1 408 615 - -
Ssu5g3377 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Ssu5g3377 638 SUPERFAMILY Protein kinase-like (PK-like) 316 630 IPR011009 -
Ssu5g3377 638 Pfam Wall-associated receptor kinase C-terminal 148 241 IPR032872 -
Ssu5g3377 638 Pfam Wall-associated receptor kinase galacturonan-binding 32 99 IPR025287 GO:0030247
Ssu5g3377 638 SMART serkin_6 329 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3377 Ssu-Chr5 83841908 83844791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3377 33 621 Receptor kinase-like Gene Family AT5G38260 40.132 6.07e-141 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ssu5g3377 PK_Tyr_Ser-Thr 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3377 - - gmx:100781977 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3377 5 83841908 83844791 Ssu5g3377 5 83841908 83844791 ECH