Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3376 atgGCGGCGAAACGGTTTTTGGATGATTCTGATCAAGACACTAATAAGCCAGGCGATAAACGGATGAGAACTACAACAAGACCTTCTTTTGCTTCGGTAATAGGAGAGGTCGTCATGGTGAAAAACTTGCAGAACCTTTTCTCCGGCTTGGAACCATTGCTTAGAAGAGTGGTGAATGAAGAGGTGGAGCGAGCGATGAGGCATTGTGTTCCACGCTCAATAACTAGGTCCCCTTCGTTGAGGATCCAAGCATTGGAGCAACCATCGAGCTATGCACTCATGTTCAACAAGAAGCTAACGCTCCCAATTTTCACGGGTAGCAGGATAGTAGACATAGATGGGAACCCCATCCACGTGGTTCTCGTTGACAAAAGCGGTGGTCAAATGGTTCCCACGAGTGTCTCCCACCCCATCAAGCTAGAAATCGTGGTGCTTGACGGAGATTTTCCTCCTGCTAGTGATAACAACGAGTCGTGGACGAGTGAGGAATTCAACAACCACATAGTGAAAGAGAGAACAGGGAAGAGGCCATTGCTCACAGGAGAATTGAATCTGACCATGAGGGACGGGATTGCACCAATTGAGGACATTGAATTCACGGACAATTCTAGTTGGATACGTAGCAGGAAGTTCAGAGTTGCCGTCAGGGTCGCTCCTGGGAACAATCAAACTGTTCGAATTCGTGAAGGCATGACCGAACCATTTGTCGTTAAGGATCACCGTGGTGAACTGTACAAGAAACACCACCCACCTATGCTCCACGACGAAGTGTGGCGCCTAGAGAAGATTGGGAAAGACGGAGCTTTCCACAAAAAATTGTCCAAAGAGGGGATAAACAGCGTGCAAGACTTTCTCAAGCTATCAGTTGTTGATCCTCATAGGCTCAGAAAGATTTTAGGCGTTGGGATGTCAGAGAAAATGTGGGATGTGACAATCAAGCATGCGACGACTTGCGACAAGGGCAGCAAAAACTACGTCTACCGTGGGCCTAATTGTACCATCATTCTGAATGCCATATGCCAGTTGATTAGAGCTGATATCAACGGGCAAAGTTTTCTGGGCAGAGAGCTAAACAACATGACCAGGGGCTATACAGAGAAATTGGTGAGAGAAGCATATGCTAGCTGGAATGACTTGGAGGAAATTGATGGGGCTCTGTTAAACCAAGGTGAAACTGTGGAGCAATTTCCAACCAACCATCAAGCATCAGTAATAGCTTATGATGAGAACGATTATTATGGTGATAAATCTACAGAAGCAGGCAACTATGTATCAAACAATAATGCACAAATCGGGTGCAGCGAGTGGCCAGTGAATGCAACATTTGGCACAACATCATTCGTGAATGGCATGCCTTACGGCTTCTCAGAGTCACAATCGGACGGTGACATAACGCCCTCAGTTGATGGTCGCGCAAGGTGGCAATAG 1428 0.4671 MAAKRFLDDSDQDTNKPGDKRMRTTTRPSFASVIGEVVMVKNLQNLFSGLEPLLRRVVNEEVERAMRHCVPRSITRSPSLRIQALEQPSSYALMFNKKLTLPIFTGSRIVDIDGNPIHVVLVDKSGGQMVPTSVSHPIKLEIVVLDGDFPPASDNNESWTSEEFNNHIVKERTGKRPLLTGELNLTMRDGIAPIEDIEFTDNSSWIRSRKFRVAVRVAPGNNQTVRIREGMTEPFVVKDHRGELYKKHHPPMLHDEVWRLEKIGKDGAFHKKLSKEGINSVQDFLKLSVVDPHRLRKILGVGMSEKMWDVTIKHATTCDKGSKNYVYRGPNCTIILNAICQLIRADINGQSFLGRELNNMTRGYTEKLVREAYASWNDLEEIDGALLNQGETVEQFPTNHQASVIAYDENDYYGDKSTEAGNYVSNNNAQIGCSEWPVNATFGTTSFVNGMPYGFSESQSDGDITPSVDGRARWQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3376 475 MobiDBLite consensus disorder prediction 455 475 - -
Ssu5g3376 475 MobiDBLite consensus disorder prediction 1 26 - -
Ssu5g3376 475 PANTHER OS02G0177800 PROTEIN 1 469 IPR012416 GO:0005516
Ssu5g3376 475 Pfam Calmodulin binding protein central domain 252 318 IPR046830 -
Ssu5g3376 475 Pfam Calmodulin binding protein-like N-terminal domain 92 240 IPR046831 -
Ssu5g3376 475 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g3376 475 Pfam Calmodulin binding protein C-terminal domain 324 382 IPR046829 -
Ssu5g3376 475 PANTHER PROTEIN, PUTATIVE-RELATED 1 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3376 Ssu-Chr5 83809291 83813115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3376 3 387 Calmodulin-binding Proteins AT5G57580 49.744 1.38e-120 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3376 - - gmx:100802257 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3376 5 83809291 83813115 Ssu5g3376 5 83809291 83813115 ECH
Ssu5g3376 5 83809291 83813115 Ssu5g3376 5 83809291 83813115 PCT