Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3373 ATGGCGACGCCGTCGGACGGAGGAGGAGTGGCGGTGCTCTCGAATTCCGTGAACAAGGTGGACTCCTCCTCGGCGCTCAATGGTGGCTTGAAGTGCTCGAAACCGGAGTCgccaattttgattttcttgttctttcacAAAGCGATTCGGAATGAACTTGACGCGCTGCACCGATTGGCCGTCGCATTCGCCACCGGCAACCGCTCCGATATTAAGCCTCTCTCCGAGCGCTACCATTTCCTCAGCTCCATGTACCGGCACCACTCCAATGCTGAAGACGAGGTGATTTTTCCAGCTCTAGATATACGTGTGAAGAATGTAGCACAAACATATTCTCTCGAGCACAAGGGTGAAAGCAACCTTTTTGATCATCTATTTGAGCTTTTAAATTCTTCTATCAATAATGATGAAAGTTTTCCAAGAGAGTTAGCATCCTGCACGGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCGAAGGAAGAGGAGCAgGTATTTCCTCTGCTTATTGAGAAGTTTTCTCTTGAGGAACAGGCATCCTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCCGAATTTCTACCGTGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAAGATAGTGCCACAGGAAAAGCTTCTTCAGAAGGTTGTTTTCACCTGGATGGAAGGAAGAAGTAGCGTTAACACAGTTGAAAGTTGTGTAGATCATTCTCAAGTTCGATGTAGTTCTAGGTCATTAACCCATCAGGTTGAGAAAGTAAACTGTGCATGTGAATCCACAACAACAGGAAAAAGGAAATATTCTGGATCTATGATAGATGTTTCTGATACCACTGGAACACATCCTATTGATGAAATATTGCTCTGGcataatgcaataaaaaaagagttaagtGAGATAGCAGTGGAGGCCAGAAAGATACAACACTCGGGAGATTTTACTAATCTATCTGCTTTTAACGAAAGATTTCAATTCATAGCCGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGgagaattttctttctttcaggAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGCGTTTGATTGAAAGTATTCAAAGTGAAGGAGCATCATCTAATTCAGATGTTGAATTTTATTCCAAGTTATGCACACATGCTGATCATATAATGGAAACCATACAGAGACATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTTTGTATAAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTAACTGAAGATGAAGCAAAGGTGTTTCAGAGAAATATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTAGTTACACTCTTCTGTGGATGGGCTTGCAAAGCTCGTAATGAAGGTCTGTGTTTGTCTTCAGGTGCATCAGGTTGCTGTCCTGCTCAAAGACTTTCTgatattgaagaaaatattgGTCAGCCATCCTGTGCTTGTGCATCTGCATTATCTAATAGACATTGCTCAGTATTAGCTGAATCAGGTGGGAACAAAAGACCAGTCAAGCGAAACATATTGGAGTCGCACAAAAATGAAGATGTACCTGAAATTTCAGAGACTGAAAGTATACAGAAACAATGTTGTAGTGCGCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGTAGTAACAATTTAGGACTGAGTTCTCTTTCTACAGCCAAGTCCTTACGCTCCTTGTCTTTCAGCTCTTCTGCCCCATCTCTTAATTCCAGCCTTTTCATATGGGAAACAGAGAGCAGCTCATGCAATGTTGGATCTACTACACAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGATGGTGATGAGACAATTCTTCGGCAATTTAATGGAAGATTTCGTCTTTTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCTTTGGAATCCAAAGAGGCACTTCATAATGTGAGTCATTCTTACATGCTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCCTGTGTTCTTTCAGAGTTTTCTGTCCTTCATGAAGCCTTGCAGATGACCCACGTGCCAGAGGATTtaagtgaaagtaattttggaaCCTCTGATGCCAATACTAGTGAcgatatcaaaaaatataatgaactTGCTACTAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCTTGGATCAGCATCTTTTCAGAGAAGAATGTGAACTGTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGAACAACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACGTCTGCACTTACTCAGGATGAGCAGAACAAAATGATGGATACATGGAAGCAGGCAACTAAGAACACTATGTTCAATGAATGGCTTAGTGAATGCTGGAAAGAGAGTCCAGTGTCTATAGCAGAGACAGAAACATCAGATCATAGCACTACTCGGAGAGGTGCTGAAAATCAAGAAAGCTTGGACCACAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTATATCGAGACTCATCTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTACTGACAAGTCGATGGATAGCCGCCCAGCAGAAATTACCTAAAGCTCTATCAGAAGGATCATCTAACAGTGTAGAAATAGAAGGACTCTCATCATCATTTCGGGACCCGGAGAAACACGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTTGGGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGCGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCGCTGCCTGAATATACAGCCAATAGGGCCTATATGCATGACATCTTCATGTAATGGGTTTTCAATGGCAAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAACATATATCATTGCCCATTTTGCAATTTATGTCGTGTTGGTCGAGGGCTTGggattgattattttcattGCATGAAGTGCAACTGTTGCCTGGGGATTAAATCAGCATCTCATAAGTGCCTGGAGAAAGGATTAGAAATGAACTGCCCTATTTGTTGTGATGACTTGTTCACTTCAAGTGCTATAGTCAGAGCTCTACCTTGTGGCCACTATATGCATTCTGCTTGCTTCCAGGCATACACGTGTAGTCACTATACATGCCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCCTATTGGCTGCTGAGGAGCTTCCTGAAGAGTATAAGGACCGCTGTCAGGACATACTCTGCCATGATTGTGATCGGAAGGGCACTTCACGCTTCCACTGGTTGTATCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTTATCAAGTGTGAGACGTCAAATTCCAGCTGCTCTTAG 3714 0.4066 MATPSDGGGVAVLSNSVNKVDSSSALNGGLKCSKPESPILIFLFFHKAIRNELDALHRLAVAFATGNRSDIKPLSERYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSSINNDESFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRNCLIKIVPQEKLLQKVVFTWMEGRSSVNTVESCVDHSQVRCSSRSLTHQVEKVNCACESTTTGKRKYSGSMIDVSDTTGTHPIDEILLWHNAIKKELSEIAVEARKIQHSGDFTNLSAFNERFQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRRLIESIQSEGASSNSDVEFYSKLCTHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYKSLCMMPLKLIERVLPWLVGSLTEDEAKVFQRNMQLAAPATDSALVTLFCGWACKARNEGLCLSSGASGCCPAQRLSDIEENIGQPSCACASALSNRHCSVLAESGGNKRPVKRNILESHKNEDVPEISETESIQKQCCSARSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFIWETESSSCNVGSTTQRPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALQMTHVPEDLSESNFGTSDANTSDDIKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLSECWKESPVSIAETETSDHSTTRRGAENQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSSLDPRRKAYLVQNLLTSRWIAAQQKLPKALSEGSSNSVEIEGLSSSFRDPEKHVFGCEHYKRNCKLWAACCGKLFTCRFCHDNVSDHSMDRKATLEMMCMRCLNIQPIGPICMTSSCNGFSMAKYYCNICKFFDDERNIYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSAIVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYKDRCQDILCHDCDRKGTSRFHWLYHKCGFCGSYNTRVIKCETSNSSCS 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3373 1237 Pfam Hemerythrin HHE cation binding domain 295 429 IPR012312 -
Ssu5g3373 1237 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Ssu5g3373 1237 Pfam Hemerythrin HHE cation binding domain 645 808 IPR012312 -
Ssu5g3373 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Ssu5g3373 1237 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Ssu5g3373 1237 CDD RING-H2_Pirh2 1120 1163 - -
Ssu5g3373 1237 Pfam Zinc-ribbon 1168 1225 IPR039512 -
Ssu5g3373 1237 PANTHER CHY ZINC FINGER PROTEIN 24 1236 - -
Ssu5g3373 1237 SMART ring_2 1121 1162 IPR001841 -
Ssu5g3373 1237 MobiDBLite consensus disorder prediction 887 905 - -
Ssu5g3373 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1117 1165 IPR013083 -
Ssu5g3373 1237 CDD Hr-like 298 427 - -
Ssu5g3373 1237 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Ssu5g3373 1237 Gene3D - 1192 1233 - -
Ssu5g3373 1237 Gene3D nmb1532 protein domain like 36 187 - -
Ssu5g3373 1237 Gene3D nmb1532 protein domain like 297 444 - -
Ssu5g3373 1237 Gene3D nmb1532 protein domain like 639 883 - -
Ssu5g3373 1237 Pfam Ring finger domain 1120 1162 IPR001841 -
Ssu5g3373 1237 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Ssu5g3373 1237 CDD Hr-like 647 807 - -
Ssu5g3373 1237 CDD Hr-like 41 167 - -
Ssu5g3373 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 1236 - -
Ssu5g3373 1237 SUPERFAMILY CHY zinc finger-like 985 1048 IPR037274 GO:0008270
Ssu5g3373 1237 SUPERFAMILY Zinc hairpin stack 1058 1114 IPR037275 -
Ssu5g3373 1237 MobiDBLite consensus disorder prediction 883 905 - -
Ssu5g3373 1237 SUPERFAMILY RING/U-box 1119 1166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3373 Ssu-Chr5 83738513 83749011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3373 37 1237 C2H2 Transcription Factor Family AT3G18290 69.071 0.0 1701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3373 K16276 - gmx:100801725 2408.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3373 5 83738513 83749011 Ssu5g3373 5 83738513 83749011 ECH
Ssu5g3373 5 83738513 83749011 Ssu5g3373 5 83738513 83749011 PCT