Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3366 ATGTACACGTCAAGGAAGAAAATCCACAAGGATAAGGATGCTGAGCCAACTGAGTTTGAAGAGTCAGTTGGGCAGGCATTGTTTGATCTGGAAAATACCAATCAGGAGCTTAAAAGTGACCTGAAGGATCTATACATAAATTCAGCAATGCAAATTGATGTTTCTGGGAACCGCAAGGCTGTTGTTATCCATGTCCCCTACAGATTAAGGAAAGGTTTCCGCAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGGAAGGATGTAATCTTGGTTGCCACCCGGAGGATATTGAGGCCACCAAAGAAAGGTTCTGCTGTTCAACGTCCCCGCAGCCGTACTCTTACTGCTGTTCATGAAGCGATGCTGGAGGATGTTGTATTGCCTGCCGAGATTGTCGGGAAGCGTGTGAGGTACCGAATTGATGGATCCAAGATTATGAAGGTTTTCTTGGACCCAAAGGAGAGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTGTATAGGAAGCTGTCAGGCAAAGATGTTGTGTTTGAGTATCCTGTTACAGAGGCTTAG 576 0.4514 MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSDLKDLYINSAMQIDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAVQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRYRIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPVTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3366 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Ssu5g3366 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 - -
Ssu5g3366 191 Coils Coil 27 47 - -
Ssu5g3366 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Ssu5g3366 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3366 Ssu-Chr5 83644386 83645834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3366 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 81.152 1.87e-115 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3366 K02993 - gmx:100527680 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3365 5 83612946 83614340 Ssu5g3366 5 83644386 83645834 ECH
Ssu5g3366 5 83644386 83645834 Ssu5g3366 5 83644386 83645834 ECH