Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3365 ATGTCTACTTCAAAGAGCGTCAGCAGTTCTACTGAAGATGACAATGAACTTAGAAGAGGGCCTTGGACTCTTGAAGAGGATAATCTTCTCGCCCAATACATTTCTAATCATGGGGAAGGGCGATGGAATTTGCTGGCTAAACGCTCAGGATTAAAGAGAACTGGGAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCTGATGTAAAACGGGGAAATTTAACCCCACAAGAGCAGCTTTTAATTCTTGAACTCCACTCGAAGTGGGGAAACAGGTGGTCAAAAATTGCACAACATTTGCCGGGCAGAACAGACAATGAAATCAAGAACTATTGGAGAACCCGGATTCAGAAACAGGCAAGACATTTGAAAATTGACACTGACAGCAGTGAGTTTCAAGAACTTGTTAGGCGTTTCTGGGTGCCAAGATTGCTTCAGAAAGCAAaagagtcatcttcttcggcCATGTCAATTCAAAACCAGACAATTCCTTTGCCTCTTGATGGTGTTTCTCAACATTCAACTATTGGGACCATACCATCACGCCCCCCTTGGCAGGGACCATGTATGAATGAAGCTGGCCCCACTTACTTGGACCAACATGAGCAGAACTCAGACTCTGAACACAACAATGGTTCATGCATCTCCTTTTCTGAGTCAGCAAATATTCCAAAAGTGTCTCAGCATTTTGGACACACCATCAGCCAATTTCATGCCTTGAATAACAATGACTTCGGCACCTTCACAACATATGATGGTTATCATCATGTAAATAACAATGCCTATGAGATGGACACCTTCAAAACGCCAACTGCAAGGGTGGCTGAGGATGTGCAATACCCAATTGGTGATTGTCAAATGGCAGGAAGCAATTGGGTAAACAGTGATTTTGCATGTAGCGTGTGGAACATGGATGAATTGTGGCAGTTTAGCAAGTTACAAAAATAA 951 0.4164 MSTSKSVSSSTEDDNELRRGPWTLEEDNLLAQYISNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTDSSEFQELVRRFWVPRLLQKAKESSSSAMSIQNQTIPLPLDGVSQHSTIGTIPSRPPWQGPCMNEAGPTYLDQHEQNSDSEHNNGSCISFSESANIPKVSQHFGHTISQFHALNNNDFGTFTTYDGYHHVNNNAYEMDTFKTPTARVAEDVQYPIGDCQMAGSNWVNSDFACSVWNMDELWQFSKLQK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3365 316 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 4 311 - -
Ssu5g3365 316 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Ssu5g3365 316 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Ssu5g3365 316 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Ssu5g3365 316 MobiDBLite consensus disorder prediction 198 214 - -
Ssu5g3365 316 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 311 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu5g3365 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Ssu5g3365 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Ssu5g3365 316 SMART sant 18 68 IPR001005 -
Ssu5g3365 316 SMART sant 71 119 IPR001005 -
Ssu5g3365 316 Gene3D - 75 118 - -
Ssu5g3365 316 CDD SANT 76 115 IPR001005 -
Ssu5g3365 316 MobiDBLite consensus disorder prediction 194 214 - -
Ssu5g3365 316 Gene3D - 19 71 - -
Ssu5g3365 316 CDD SANT 21 66 IPR001005 -
Ssu5g3365 316 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Ssu5g3365 316 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3365 Ssu-Chr5 83612946 83614340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3365 14 158 MYB Transcription Factor Family AT1G68320 75.172 1.68e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g3365 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3365 K09422 - gmx:778042 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3365 5 83612946 83614340 Ssu5g3366 5 83644386 83645834 ECH
Ssu5g3365 5 83612946 83614340 Ssu5g3365 5 83612946 83614340 ECH