Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3360 ATGGAAGAAAACCTACCTCCTGGGTTCAGGTTCCATCCCACAGATGAAGAGCTCatcacttattatttattaaggaaagtTTCCGATACTGGCTTCACATCCAAAGCTGTTGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCCATGGGCGAGAAGGAATGGTATTTCTTCAGCTTGAAAGATCGGAAATATCCAACTGGGCTTCGAACCAACCGAGCCACCGAATCAGGCTATTGGAAAACCACAGGAAAAGATAAGGAAATTTTTGGTGCTGGAGTTTTGATTGGGATGAAGAAAACCTTAGTCTTTTATATGGGCAGAGCTCCAAGGGGTGAGAAAAGTAACTGGGTTATGCACGAATATAGGCTGGAAAACAAGCAACCCTATAGATCTTCAAAGGAAGAATGGGTGGTTTGCAGAGTTTTCCAAAAGAGCTCAGCACCGAAGAAACCACATCAGACATCATCCTCCCAACCATCTCAAGAGTCACCTACCTCAATGGTCAACGAATTTGGTGACGTTGACCTACCAAATCTAAACAGCATTGCAAATTCATCCAGTAGCTTCACCAACGTTGCGGGACAAACCTACAATGTCGGTGGTGATCCCAGCAATGTTAACACAAACATGAACTTGACCATGAATTGGCCTTCTGCAACTGAGGTTCCATCTCTCCCGTGGCCGTCTGGATTGCTGAATCCAAACCTTTCCGTGAATTCATTGCTTCTCAAAGCATTGCAGCTTAGGAGTACTTACCATCAACAAAGAGAAGCTGTGGCTAGTGATCACTTTGCACCATATGTTCCTCAGGGATTAATTTCTCACAATATTGGGActgatcatcatcatcacctcCCCCCAAACCTCaatgcttcttcttcttcttccaaagCTTTAGAATCTTGTGTGCCGCAGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 972 0.4187 MEENLPPGFRFHPTDEELITYYLLRKVSDTGFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGAGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLENKQPYRSSKEEWVVCRVFQKSSAPKKPHQTSSSQPSQESPTSMVNEFGDVDLPNLNSIANSSSSFTNVAGQTYNVGGDPSNVNTNMNLTMNWPSATEVPSLPWPSGLLNPNLSVNSLLLKALQLRSTYHQQREAVASDHFAPYVPQGLISHNIGTDHHHHLPPNLNASSSSSKALESCVPQQEQPFNMDSIW 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3360 323 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Ssu5g3360 323 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Ssu5g3360 323 MobiDBLite consensus disorder prediction 284 323 - -
Ssu5g3360 323 MobiDBLite consensus disorder prediction 154 175 - -
Ssu5g3360 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 261 - -
Ssu5g3360 323 MobiDBLite consensus disorder prediction 293 323 - -
Ssu5g3360 323 PANTHER BNACNNG63190D PROTEIN 2 261 - -
Ssu5g3360 323 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Ssu5g3360 323 MobiDBLite consensus disorder prediction 154 177 - -
Ssu5g3360 323 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3360 Ssu-Chr5 83545160 83548494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3360 1 323 NAC Transcription Factor Family AT3G18400 57.692 3.45e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g3360 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3360 - - gmx:100775645 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3360 5 83545160 83548494 Ssu5g3360 5 83545160 83548494 ECH
Ssu5g3360 5 83545160 83548494 Ssu5g3360 5 83545160 83548494 PCT