Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3357 ATGTCTCCATGGAAATCTGAAGTTGCATGTCCCTCCAGGAACATAGTGATGAATTCACCATCTGATAACAACAGTTCAGAACGCAGTGAGTTGGGCAGCCCAAATGCTAGTTCCAATGAAATTCATGAAAATCGGGACTTTCTATCCTTCTATGGTGAGGTAGAAGCCAAACATCGATTGGTCTTGGTTCAGTGGTTAACTAGTCTTGTTCCTTTATTGAACTTCCCAATAAATGTCACGGATGGTGAATTAAGAGCATGCTTGAGCAATGGTACAGTTTTGTGCCAGATACTGAACAGGCTACGACCTGGTACCGTGATTGTGGTTAGTGAACCTGATAATTCTCTGCCATCACAATCAGAAAATGTTAAATCGTTTCTGAAAGCTTTGGACGGAATGGGATTGCCCCGGTTTGAAATATCAGACCTAGAGAAGGGGTCTATGAAAGCTGTTGTGGATTGTCTTTTAACACTCAGAGAGAAAAGTTTGCAGAATGCTTTGGGAGATAATATTTCTGTAACTAATTCCAACACGGTGAGCCCTCGTGGGAATGTACCATTCAATTTTCATTGTTCTCCAACATTTGGTGGAGAGCAGAGGAAGGTTTCAGCTGGCTCAAAGTTGCAACGTGTTATGAGTAGCCCAATTATGGCGGGTCCGTCATCAGCTTCATTGATACACCATGTTGGTCATAAGTTCCATGAGGTGTTTCAACTGAAACCTGGGAGTTACGCAGATCTTCCTGTTGCAAAAATATCAGAAATGATGAAATCAAACAGTTTAGATAGTCTAATGATGCAGACTGCTCCCACTCAGTCGCTTCTGAGTGTTGTGAATGGTATTCTTGAAGAAAGTGTTGAAAGAAGAAATGGGGAAATACCTCATCGTGTGGCTTGCTTGTTGAGAAAGGTAACTCAAGAGATTGAGCGACGCATGTCAACCCAAGCAGAACATTTACGAACTCAAAACAATCTTTTCAAGGCTCGGGAAGAAAAATACCAATCGAGAATAAGAGTACTCGAGGCACTTGCATCTGGAACTAAAGATGAGAGTGAGATATTTGCTGGCCAGTGTCAGCAGTTGAAGGGTGAGAAGAtcaaagaggaagaaaagaaggTAGATGAGAATGAAGTTGTTAGGTTGATAAAAGAGCAGGAGGacaaaaatttggaaatttcagCTTTGAAGATAGAACTGGAAACAGCCAAAAGAACATATGAAGTACAATTCTCACAGTTGGAAGAAGAAGCTAAAGGTGTTAAAGCAGAATTGACACAGAAGGCCCAAGAATATGAGCATCAATTggaagaattaagaaataagGTTGAAAAGATCAAAGAGCAAGTAAAATCAGAGGATGAAGGGGAAATTGTTAGGTTGATGAAAGAACAGGAGGacaaaaatttggaaatttcagCATTGAAGCAAGAACtggaaacaaccaaaaaaacaTATGAAGCACAATGTTCACAGTTGGAAGCAGAAGCTAAGGATGCTAAAGCAGAATTGACACAGAAGTCTCAAGAATATGAGCATCGGTTggaagaattaagaaataagGATGAGAAGAtcaaagaggaagaaaaaaaggaagatgaaAAGGAAATTATTAGGTTGATGAAAGAGCAGGAGGacaaaaatttggaaatttcagCATTGAAGCAAGAACTAGAAACAACCGAAAAAACATATGAAGTACAATGTTCACAGTTGGAAGCAGAAGTTAAGGATGCTAAAGCAGAATTGACACAGAAGTCTCAAGAATATGAGCATCGATTggaagaattaagaaataagGCTGAGAAGATCAAAGAGGAAGGAAAGAAGGCagatgaaaaagaaatcatTAGGTTGATGAAAGAGCAGGAGGacaaaaatttggaaatttcatCATTGAAGCAAGAACTGGAAACAACCAAGAAAACACATGAAGTACAATGCTCACAGTTGGAAGGAGAAGCTAAGGGTGCTAAAGCAGAATTGGAACAAAAGTCTCAAGAATATGATCATCGATTggaagaattaagaaataaggTTAAGGAACTTGAGGTATCTTCTGATTCAAAAGATCAGAAGTGGAACATGAAAATGAACCAATTGCAGACtgttataaaatttcaattcagtTCCCTACAGAAATTGAAATTATCTTGGGAATCCATTAAGCAAAGTGTTATGAAAGAGCATACGGTTTATGCGGAGGAGTATGATCGATTAGGTGTAAATCTTAAACCACTGCTACATGCAGCTGAGAACTACCATGCTCTTCttactgaaaataaaaaactgtttAATGAGGTTCAAGAATTAAAAGGAAATATCAGAGTATATTGTCGAATTAGACCATTTCTTTCaggtaaaaaggaaaaacagtCTATTGTTGAACACATTGGTGAAAATGATTTGGCTGTGGCAAATCCATCCAAAGAAGGAAAAGATGCTCTtagatcatttaaatttaacaaggTTTTCGGCTCTACCACAACTCAAgCGGAGGTGTACTCTGATATCCAAGCCTTTATAAGATCAGTACTGGATGGGTATAACGTATGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTACACAATGACTGGTCCAAATGGGGCAACAATGGAGACTATTGGTGTTAATTATCGAGCTCTAAATGACCTCTTCAGGATTTCCACAAGTAGAGAAAGCTTCATAGACTATGAGATTGTGGTTCAAATGGTTGAGATATATAACGAGCAAGTGCGTGACTTGTTAATAACAGATGGTTCTCCAAAAAGATATCCTTTTCTCAATAACTTTGGACATGTTATTCTTTGCATGGATTTTCTTCTTActaCAGTCCCAGATGCTAGCTTGTTCCCTGTGAAATCACCTTCAGATGTGATTAAGCTAATGGACATTGGACTTAAAAATAGAGCCATTGGTGCAACTGCTATGAATGAAAGAAGCAGCCGTTCTCACAGTGTTGTCTCAATTCATGTTCGTGGGAAGGATTTGCGGTCTGGTTCTACTATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGATCGGTCTGAAGCAACTGGGGATAGGCTTAAGGAAGCACAGCATATAAACAAATCACTATCTGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAGAGCCCCCATGTACCATACAGGAACAGCAAGCTTACTCAACTTCTACAAACTGCTCTTGGTGGTCAAGCAAAGGCACTCATGTTTGTCCAAATTAATTCAGACGTAAGTTCATATTCTGAAACTCTGAGCACTTTAAAGTTTGCTGAGAGGGTTTCCGGAGTGGAATTAGGAGCTGCACGAAGTAGCAAAGATGTCAGAGAATTAATGGAACAGGTGTCTTCTTTGAAGAACACTGTTTTGGAAACAGATGAGGAGATTGAGAGGCTTCAACTACTCAAAGGTTCAGTTCGTAGTATTCATAAGCGAAACCATATTCCACGAAGTGGAAGTAGTCAGCACCTTGAAGCTAATAGCCAGCAACCAATGGATGATCATATACACCAAAATGAATTTCTCCACCAATCTGAACTTCATGGGGGAGACAGAGGAAAGAATATTGCTGCAATTGCAGAAACTTCGGGTTTTACAGATTCTGATTTTGATGGAAGATCAAGTGATCTTTCTGATAGTGGTGTTGCTCCAGGCACAGAAACTGATGGCTCTGAAAATTCCAGTCTCACTGAAGGCACAAAATCATCAGATAAGACGGGGAGGTCTAAAGCAATTCGCAAAACTGTTCAAGCGATGAGGAAATTAAGCCGAGCTTCATCTATCGCGACCAGCCCAGTAAAGGACCCCGTGAAGAAGTCACCAGGTATGAAAAAAAACGTCAGTATTGGCAACCTTAAACCTCCAAAACTGTGGAAGTAA 3909 0.3715 MSPWKSEVACPSRNIVMNSPSDNNSSERSELGSPNASSNEIHENRDFLSFYGEVEAKHRLVLVQWLTSLVPLLNFPINVTDGELRACLSNGTVLCQILNRLRPGTVIVVSEPDNSLPSQSENVKSFLKALDGMGLPRFEISDLEKGSMKAVVDCLLTLREKSLQNALGDNISVTNSNTVSPRGNVPFNFHCSPTFGGEQRKVSAGSKLQRVMSSPIMAGPSSASLIHHVGHKFHEVFQLKPGSYADLPVAKISEMMKSNSLDSLMMQTAPTQSLLSVVNGILEESVERRNGEIPHRVACLLRKVTQEIERRMSTQAEHLRTQNNLFKAREEKYQSRIRVLEALASGTKDESEIFAGQCQQLKGEKIKEEEKKVDENEVVRLIKEQEDKNLEISALKIELETAKRTYEVQFSQLEEEAKGVKAELTQKAQEYEHQLEELRNKVEKIKEQVKSEDEGEIVRLMKEQEDKNLEISALKQELETTKKTYEAQCSQLEAEAKDAKAELTQKSQEYEHRLEELRNKDEKIKEEEKKEDEKEIIRLMKEQEDKNLEISALKQELETTEKTYEVQCSQLEAEVKDAKAELTQKSQEYEHRLEELRNKAEKIKEEGKKADEKEIIRLMKEQEDKNLEISSLKQELETTKKTHEVQCSQLEGEAKGAKAELEQKSQEYDHRLEELRNKVKELEVSSDSKDQKWNMKMNQLQTVIKFQFSSLQKLKLSWESIKQSVMKEHTVYAEEYDRLGVNLKPLLHAAENYHALLTENKKLFNEVQELKGNIRVYCRIRPFLSGKKEKQSIVEHIGENDLAVANPSKEGKDALRSFKFNKVFGSTTTQAEVYSDIQAFIRSVLDGYNVCIFAYGQTGSGKTYTMTGPNGATMETIGVNYRALNDLFRISTSRESFIDYEIVVQMVEIYNEQVRDLLITDGSPKRYPFLNNFGHVILCMDFLLTTVPDASLFPVKSPSDVIKLMDIGLKNRAIGATAMNERSSRSHSVVSIHVRGKDLRSGSTMVGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALSQKSPHVPYRNSKLTQLLQTALGGQAKALMFVQINSDVSSYSETLSTLKFAERVSGVELGAARSSKDVRELMEQVSSLKNTVLETDEEIERLQLLKGSVRSIHKRNHIPRSGSSQHLEANSQQPMDDHIHQNEFLHQSELHGGDRGKNIAAIAETSGFTDSDFDGRSSDLSDSGVAPGTETDGSENSSLTEGTKSSDKTGRSKAIRKTVQAMRKLSRASSIATSPVKDPVKKSPGMKKNVSIGNLKPPKLWK 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3357 1302 MobiDBLite consensus disorder prediction 12 38 - -
Ssu5g3357 1302 Coils Coil 753 773 - -
Ssu5g3357 1302 Gene3D - 531 574 - -
Ssu5g3357 1302 Gene3D - 374 414 - -
Ssu5g3357 1302 Gene3D - 451 493 - -
Ssu5g3357 1302 Gene3D - 610 651 - -
Ssu5g3357 1302 Pfam Calponin homology (CH) domain 61 160 IPR001715 GO:0005515
Ssu5g3357 1302 MobiDBLite consensus disorder prediction 1208 1302 - -
Ssu5g3357 1302 MobiDBLite consensus disorder prediction 1 38 - -
Ssu5g3357 1302 PANTHER KINESIN-LIKE PROTEIN KLP-3 18 375 - -
Ssu5g3357 1302 PANTHER KINESIN-LIKE PROTEIN KLP-3 622 1302 - -
Ssu5g3357 1302 PANTHER KINESIN-LIKE PROTEIN KLP-3 465 542 - -
Ssu5g3357 1302 PRINTS Kinesin heavy chain signature 847 868 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g3357 1302 PRINTS Kinesin heavy chain signature 1008 1026 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g3357 1302 PRINTS Kinesin heavy chain signature 1057 1078 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g3357 1302 PRINTS Kinesin heavy chain signature 977 994 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g3357 1302 Coils Coil 385 455 - -
Ssu5g3357 1302 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 18 375 - -
Ssu5g3357 1302 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 545 615 - -
Ssu5g3357 1302 Gene3D Kinesin motor domain 714 1109 IPR036961 -
Ssu5g3357 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 1141 IPR027417 -
Ssu5g3357 1302 ProSiteProfiles Calponin homology (CH) domain profile. 56 163 IPR001715 GO:0005515
Ssu5g3357 1302 ProSiteProfiles Kinesin motor domain profile. 773 1107 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g3357 1302 Gene3D - 51 164 IPR036872 -
Ssu5g3357 1302 SMART kinesin_4 771 1115 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g3357 1302 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 622 1302 - -
Ssu5g3357 1302 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 465 542 - -
Ssu5g3357 1302 MobiDBLite consensus disorder prediction 1153 1174 - -
Ssu5g3357 1302 SUPERFAMILY Calponin-homology domain, CH-domain 57 159 IPR036872 -
Ssu5g3357 1302 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 385 453 - -
Ssu5g3357 1302 PANTHER KINESIN-LIKE PROTEIN KLP-3 385 453 - -
Ssu5g3357 1302 PANTHER KINESIN-LIKE PROTEIN KLP-3 545 615 - -
Ssu5g3357 1302 SMART ch_5 58 161 IPR001715 GO:0005515
Ssu5g3357 1302 Coils Coil 1111 1145 - -
Ssu5g3357 1302 Pfam Kinesin motor domain 779 1105 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g3357 1302 Coils Coil 457 613 - -
Ssu5g3357 1302 MobiDBLite consensus disorder prediction 1222 1245 - -
Ssu5g3357 1302 Coils Coil 615 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3357 Ssu-Chr5 83497737 83507315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3357 505 1107 Calmodulin-binding Proteins AT5G65930 31.487 1.07e-67 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3357 K10406 - gmx:100777268 1966.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3357 5 83497737 83507315 Ssu5g3357 5 83497737 83507315 ECH
Ssu5g3357 5 83497737 83507315 Ssu5g3357 5 83497737 83507315 PCT