Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3356 ATGAGGGGAGACATGAAAGACGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATCCGCAGAAGGGCACGGTGGTTCTGCGCAGCTGACGATGCTTTTCTCTGCCATGGCTGCGACACTTTGGTTCATTCCGCGAACCAGTTAGCAAGCAGGCACGAAAGGGTTCGGCTTCAAACTACGTCTTCCAAGGTAAACACCACCGCATACGCATGGCACAGTGGATTCACGCGCAAGGCAAGAACCCCAcgtcacaacaacaacaacaacaacaacaagcaCTTCGCACTGCAACAGCGTCTCAAAGACGAGGTTCTCTTCAACAACACCAGTGTTCTTCCCCTCGTGCCGGAGCTCGGatgggaagaacaagaacaggTGGCTGTGGACAATGACGAGACCGAGGAACGGATGCTGTGTCGCGTGCCCGTGTTCGACCCTTTTGACGTGAGAACCGATGACTTGGATAGTTTTTCTGACATGGATTTCGCGGAGTTCGCTGCTGATGTTGAAAGCCTGCTTGATAAAGAAGAGGATAAAACAAGTGCTGGTGTGGGAAGGGGAGGGGAAGTGGGGGTTCAAGGTGCAATGGTGAAGGTTAAGGATGAAGACGAAGTTGATGGGGATGTGGCGTGTTATCTGGAGTCAGTTTTTGACATGACAAATGAGGATGCCTTTCGTTGGAATAACATTGAGTCTGTGCTGTCGGGTGCACGGCAAGAGAGCAAGAGGAGTGTGGTGACGTGCGATGGTGGGGTTAGTGAAGAAGGGGGAACAAAGAGAGACATATTTTTGAGACTGAACTATGATGAGGTTATCACTGCTTGGGCTAGCCAAGGTTCTTCTCCTTGGACAACTGCAAACCCACCTAAGTTCAACTCGGATTATGACTTCTGCTTGGGTTTGAGGGGTGCAGATGGGGAAATAAGAAGCTTAAGGGGGCATCTAGATGGGGGAAGAGAAGCAAGAGTGTCGAGgtatagagagaagagaaggacTCGTTTGTTTGCAAAGAAGATACGATATGAAGTAAGGAAGTTGAACGCAGAGAAAAGGCCTAGAATGAAAGGTCGTTTTGTGAAGAGGACGTGCTTTGTTGGAGCCAATGCTTTTCCTGCTTACCACTGA 1137 0.4741 MRGDMKDAGALGAKTARACDSCIRRRARWFCAADDAFLCHGCDTLVHSANQLASRHERVRLQTTSSKVNTTAYAWHSGFTRKARTPRHNNNNNNNKHFALQQRLKDEVLFNNTSVLPLVPELGWEEQEQVAVDNDETEERMLCRVPVFDPFDVRTDDLDSFSDMDFAEFAADVESLLDKEEDKTSAGVGRGGEVGVQGAMVKVKDEDEVDGDVACYLESVFDMTNEDAFRWNNIESVLSGARQESKRSVVTCDGGVSEEGGTKRDIFLRLNYDEVITAWASQGSSPWTTANPPKFNSDYDFCLGLRGADGEIRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYH 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3356 378 CDD Bbox1_BBX-like 18 61 - -
Ssu5g3356 378 Pfam CCT motif 323 365 IPR010402 GO:0005515
Ssu5g3356 378 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 371 - -
Ssu5g3356 378 ProSiteProfiles CCT domain profile. 323 365 IPR010402 GO:0005515
Ssu5g3356 378 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 371 - -
Ssu5g3356 378 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Ssu5g3356 378 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Ssu5g3356 378 SMART bboxneu5 14 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3356 Ssu-Chr5 83482225 83483717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3356 8 365 C2C2-CO-like Transcription Factor Family AT1G25440 40.972 5.60e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu5g3356 zf-B_box 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3356 - - gmx:100812563 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3356 5 83482225 83483717 Ssu5g3356 5 83482225 83483717 PCT