Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3354 ATGAAAAGCTCTAGAAGTCAATCTCTGAAGGAAGGAATGAAGACTGATAAGGGAAAAGAAAGGGTTGCAACCAAGAAAGGAAACACCTTGTCTTTGAAGAAAATTCGAATTATATCTAATGACCCAGATGCTACAGATTCTTCAAGCGAAGAAGACAATAAAGTATCAAATGAAGGCACTCAATCGAACGGTTCTAAGCGATGTGTCACAGAGATTATGGTTCCAAACGTTAAACTTTATCCTCGCAAAGGGAAACGCCCCTCATCCAGTATATATAAAGGTGTTAGACGCAGAAAATCGGGAAAATATGTAGCTGAGATTCAAGACCCATTTCGAAAGCGTCGTGTGTGGCTTGGCACATTTAAAACTGACATAGAGGCTGCAATTGCTTATAGCCAAAAGAAGGAAGAGTTTGATAGACAAAAGGCTCTGCAAAATGGAGATGCATCAGTGCATTTGGAGGATGCCAAAGAAGACGTGGCTCATCCATCTCAAGTATCTTAA 504 0.4028 MKSSRSQSLKEGMKTDKGKERVATKKGNTLSLKKIRIISNDPDATDSSSEEDNKVSNEGTQSNGSKRCVTEIMVPNVKLYPRKGKRPSSSIYKGVRRRKSGKYVAEIQDPFRKRRVWLGTFKTDIEAAIAYSQKKEEFDRQKALQNGDASVHLEDAKEDVAHPSQVS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3354 167 MobiDBLite consensus disorder prediction 1 67 - -
Ssu5g3354 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF118-LIKE 77 148 - -
Ssu5g3354 167 CDD AP2 90 131 IPR001471 GO:0003700|GO:0006355
Ssu5g3354 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF118-LIKE 8 78 - -
Ssu5g3354 167 Gene3D AP2/ERF domain 91 148 IPR036955 GO:0003700|GO:0006355
Ssu5g3354 167 MobiDBLite consensus disorder prediction 7 27 - -
Ssu5g3354 167 MobiDBLite consensus disorder prediction 142 167 - -
Ssu5g3354 167 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Ssu5g3354 167 Pfam AP2 domain 91 137 IPR001471 GO:0003700|GO:0006355
Ssu5g3354 167 MobiDBLite consensus disorder prediction 80 99 - -
Ssu5g3354 167 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 78 - -
Ssu5g3354 167 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Ssu5g3354 167 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Ssu5g3354 167 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Ssu5g3354 167 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 77 148 - -
Ssu5g3354 167 SUPERFAMILY DNA-binding domain 90 146 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3354 Ssu-Chr5 83464804 83465307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3354 26 139 AP2-EREBP Transcription Factor Family AT1G68550 41.333 1.39e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g3354 AP2 3.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3354 - - aprc:113866790 141.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3354 5 83464804 83465307 Ssu5g3354 5 83464804 83465307 ECH
Ssu5g3354 5 83464804 83465307 Ssu5g3354 5 83464804 83465307 PCT