Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3353 ATGCAAAGCTCTCGAAGGCAATCTCTGAAAGAAAGATTGCAGAGtaagaagggaaaagaaaaggttgtgcccaagaaagaaaaatgcaagCCTTCAAAGAAAATTCGAATTATATACACTGACCCAGATGCTACAGATTCTTCAAGCGAAGAAGACACTCAAACAAATGGTTCTAAGCGACGTGTCATGGAGATTATGTTTCCAAGCATGTTAGGTAACTCAAATGCTAAACTCTATCCCCACAAAGGAAAACGCCCCTCATCCAGCATGTACAAAGGTGTTAGATGCAGAAAATCGAGGAAATATGGAGCTGAGATTCGAGACCCATTTCAAAAGCGCGTGTGTGGCTTGGTACTTTTAATACTAAGAAAGAGGATCATGAATGTGCTTATTTTGATTCCACCGATTGGGTTTTGGGGAAGTGagttggattgggttgggtcatgctTATCCCTAGAAACTGTAAATGGGCTTCGGAAAGACTCTGTAGATCCGGGAGACATACTATCTGTTCCCATTGCAGACCTTGAGGCACAAGTGATAGCCTTGACTTCGTAG 558 0.371 MQSSRRQSLKERLQSKKGKEKVVPKKEKCKPSKKIRIIYTDPDATDSSSEEDTQTNGSKRRVMEIMFPSMLGNSNAKLYPHKGKRPSSSMYKGVRCRKSRKYGAEIRDPFQKRVCGLVLLILRKRIMNVLILIPPIGFWGSELDWVGSCLSLETVNGLRKDSVDPGDILSVPIADLEAQVIALTS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3353 185 MobiDBLite consensus disorder prediction 9 40 - -
Ssu5g3353 185 MobiDBLite consensus disorder prediction 1 59 - -
Ssu5g3353 185 PANTHER OS01G0224100 PROTEIN 32 114 - -
Ssu5g3353 185 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3353 Ssu-Chr5 83448003 83454649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3353 27 112 AP2-EREBP Transcription Factor Family AT1G68550 33.654 5.45e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3353 - - gmx:102661155 77.0257