Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3344 ATGGCTCCTAGAATTTCCTTCATTGAAAAAATTGTTCCTGGAACCTTAGAGTGGAGGTTAAGAGTTCGAATTATCCGGCTTTGGAAGCAAACTGAGTACAACAATCCTATGCAGATTAAAAGTACTGAACTCAAACTTCTTGATGAAAAGACTGCACGAATTCAAGCTACTATCAAAAGAAGTTTGATTGAACAGTTTCAAACTACTATAGAAAAAGGTTCTgcttatttgattgaaaatttgttGGTGGCTAAAACAGATCCCAAATTTAAGGCAACTAAGCACAAGTATAAATTGAGTTTTATGAAGAGCACAAAATGTACAAAGTTTGAGACTGATAGtataccaaaaacatattttgattttcttccaTTCACAAAGATACTTGAAGGATTAGATCAAGGTTTTTTGTTTGTTGTCATAGGTCATGTAGTTGAGAAGGACAACATCAAAGAGATGCAAACAAAAAGtggaaaaaagaaactaatggATATCATACTTGAAGATTTGGAGTaa 516 0.2946 MAPRISFIEKIVPGTLEWRLRVRIIRLWKQTEYNNPMQIKSTELKLLDEKTARIQATIKRSLIEQFQTTIEKGSAYLIENLLVAKTDPKFKATKHKYKLSFMKSTKCTKFETDSIPKTYFDFLPFTKILEGLDQGFLFVVIGHVVEKDNIKEMQTKSGKKKLMDIILEDLE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3344 171 SUPERFAMILY Nucleic acid-binding proteins 7 111 IPR012340 -
Ssu5g3344 171 PANTHER REPLICATION FACTOR A 1, RFA1 7 161 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu5g3344 171 Pfam Domain of unknown function DUF223 44 130 IPR003871 -
Ssu5g3344 171 CDD RPA1_DBD_A_like 19 106 - -
Ssu5g3344 171 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 7 161 - -
Ssu5g3344 171 Gene3D - 113 171 IPR012340 -
Ssu5g3344 171 Gene3D - 4 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3344 Ssu-Chr5 83119187 83120309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3344 2 144 Core DNA Replication Machinery Family AT2G06510 28.378 8.89e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3344 - - mtr:MTR_1g105785 151.754