Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3339 ATGGATTTAGAAGAGAAGTTCCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCCGAAAAAAATGGCCATTCAGATGGTGCTTCAAAAAGTTCAGAACTCCTTCAGCAGTTCCTAAAATGTGGTCCAAAAAAGGAACTTCTTCGAACTTGTTTTGACAAGgacaaaaaaaacatttcatcaaAAAGCAGGATGACTGAAACCAAGTCAACCGGTAAGATAATTAAGAAACAAGACACAAAAAAAGTTTCTAGTTTCAGCCAGCAGCCCTCTAGAAAGCAACCTCGGAAGGGTGAAAACCCCACTCGACTCACCCCTCCTCCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATCTGTAAAAATGCTGCTTGTAGGGCGGTTCTGTCTATAGATGACACATTTTGTAGAAGATGCTCTTGCTGTATTTGTCAcctttttgatgataacaaggATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGTGCCCTTCAACATGAAAAGGTGGGAGTTGTTGATCATGGGCAACTGATGCAACTAGACGGTGGTTATTGTTGCGCTTCCTGTGGTAAAGTTACGGGGATACTTGGGTGCTGGAAGAAGCAGCTAAATATAGCAAAGGATGCCCGGCGTGTAGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTGGATGGAACctcaaaatttaaagacttGCACCAAACAGTACAAGAGGCGAAGGCTAAACTGGAGACAGAAGTTGGTCCTGTCAATGGTGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCCTATTGCCAGTGATGTACAGAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATAGGTGGCTTGCCACTGTTCCCAATGTCAATCCAGATTCCACAGAGGGCTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCtcagtcaaaatatttttaattgaaatgtcAAATATATGTTCTGAGGAAATTAAGGGATACAAGCTCTGGTATTACAAGAGTCGGGACGAATCACCCACTGAAGACCCTGTTTCCATCTTTCCCAAATCTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCGCAGAATATACTTTTCGGATTATATCTTACACTGATACACGTGACTTGGGTCATTCTGAGGCTAAGTGTTTCACCAAGAGCATAgagataattaaaaacaatccgTCTTCCTCTGTTGCTATGGATCATGAAAAAGAGAACCTTCTTACTATGGGCAATTCTTCGGGCTCCAAGATGGGGCCCAATGCCACAATGGAAGACTATGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCATCTTGCTTGGGCTCAAGAACAAGGTTATTTGGAAGAGATTTGCTGTGCCAATATGAAAAATTGCTGTGGACAAAGTGAAATGGATAAGCCTAGAATTCCAGAAGTACAGTTGCCTTCAGTTTCGCGAGGCCTTGATTTAAATGTTGTTTCAGTGCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGATGCAAGCTGTTGAGGCAGACGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCCCAAACCTGGACCCATGGGCCAACAGGAGAAGTGTCTGCTGTTGATTCTCGCATAGATATGTGCAGGAAAAGGATAGCAAGCACAAACGAAGAAACACATGATTGTGACAGCACTTTGATAAATGGTTCTCCTTTACGCATATCTGATGGTTCATCTTTCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTAAGGTCGACAGAACAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATCGATGATCCAAGTAGTTTGGCAGGACAACTGGTAGACTCTTTTTCTGATATTATATCCAACAAGAGGCAAAGAAATGGATTCTGTAGTAAAGCTGCGGCATCAAATTAA 2163 0.4068 MDLEEKFLAKVSGVQSLSSSVQSTPEKNGHSDGASKSSELLQQFLKCGPKKELLRTCFDKDKKNISSKSRMTETKSTGKIIKKQDTKKVSSFSQQPSRKQPRKGENPTRLTPPPDQSSDFGHSNTWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLHQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADRWLATVPNVNPDSTEGSLPAACKFVFEEVTTSSVKIFLIEMSNICSEEIKGYKLWYYKSRDESPTEDPVSIFPKSQRRILISNLKPCAEYTFRIISYTDTRDLGHSEAKCFTKSIEIIKNNPSSSVAMDHEKENLLTMGNSSGSKMGPNATMEDYGFKVRDLGKILHLAWAQEQGYLEEICCANMKNCCGQSEMDKPRIPEVQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLMQAVEADDDAASHDLEKNGLARSHGSGDSQTWTHGPTGEVSAVDSRIDMCRKRIASTNEETHDCDSTLINGSPLRISDGSSFLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRQRNGFCSKAAASN 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3339 720 MobiDBLite consensus disorder prediction 573 588 - -
Ssu5g3339 720 SUPERFAMILY Fibronectin type III 332 409 IPR036116 GO:0005515
Ssu5g3339 720 MobiDBLite consensus disorder prediction 66 120 - -
Ssu5g3339 720 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Ssu5g3339 720 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Ssu5g3339 720 MobiDBLite consensus disorder prediction 11 37 - -
Ssu5g3339 720 MobiDBLite consensus disorder prediction 66 86 - -
Ssu5g3339 720 PANTHER VIN3-LIKE PROTEIN 1 55 716 - -
Ssu5g3339 720 Gene3D Immunoglobulins 314 417 IPR013783 -
Ssu5g3339 720 MobiDBLite consensus disorder prediction 87 101 - -
Ssu5g3339 720 MobiDBLite consensus disorder prediction 568 588 - -
Ssu5g3339 720 CDD FN3 332 408 IPR003961 GO:0005515
Ssu5g3339 720 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 716 IPR044514 GO:0010048|GO:0040029
Ssu5g3339 720 MobiDBLite consensus disorder prediction 12 37 - -
Ssu5g3339 720 CDD PHD_VIN3_plant 148 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3339 Ssu-Chr5 83008533 83016394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3339 124 711 PHD Gene Family AT3G24440 48.586 1.41e-179 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3339 - - gmx:100816128 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3339 5 83008533 83016394 Ssu5g3339 5 83008533 83016394 ECH
Ssu5g3339 5 83008533 83016394 Ssu5g3339 5 83008533 83016394 PCT