Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3337 ATGGCAAGTCGACTGAAGGAAGATGAGAAGAATGAACGAATAATTCGAGGTCTTCTCAAACTCACACCGAATCGGAGATGTATTAACTGTAACAGCTTGGGGCCGCAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACCAACTGTAGTGGAATACACCGAGAATTTACACATCGGGTAAAGTCAATTTCAATGGCTAAATTTACTGCACAGGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAAATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCAATGTTGACAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGTGAGAGGACCTATGACAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTCTATGAAAACAAGAGAATGGAAACATATCAGGGAGGACCTAAAAGTCCTCCATACGAGGACACATATGAACGTCGGTACGGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAATAGGCAATATGGTGATTACAAGAGAAGCCCCAGTCGTCCACCAATAATCAATGATTGGCGTAGAGAAGATAGATTTGGGGATGGACGGAAATTTGAAGATCATAGAATACCCGATGGAAATAATAAGGTGGAAAGCCATTCTCCTGAGCGAACCAAGGATCTGGATTCTTCCAGCCCACCTGTGGTCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCTCTTCGAATTAGTGAACCGCCCAAAACAAACAGTGGACAGGCTGTTAATGGCTCAGCACTCACACAGAGAAATGCATCTTCCAGTAGCTTGGCATCAAACCCGGCAGTAGTTAAACTTGAGACTATTAAGAGCCttattgattttgatgatgATCCTGAACCACCTGTTGCTCCAGCAATTCCTCAAGCCCAGCAAACTACTGTGGCTCAACTTGGGATGCCTGCAAATTCCAATGATAATAATTGGGCCTCTTTTGATGTTGCTCCAGAGGCAAAAGCATCTCAGGGTCCTTCAAATGTAAATCCACTTGAATCTGTGTTGACTCAGTTGTCAGTACCAGTATCTTTACCTTCTCAGGTTTCTGGAGTCCAAGGACTTGTGATGGGATCAGCTCTTACCGCAACTGCTACTGGAGCTCCAATTGTCAGCAGCTTCTCAACATTCCCAGCCAGTGGTGCTTCAGTAACATCTTCTGGATTGACAATATCATCAACTCTCAATAATGCAGGACAGTGGGCTAGTTTGCAGTATCTGCAAGAGCAACCTTTGTTCACTGCTGCTGCTAGTCGGCCTACTATTCAACAATCTACGCCACCAGTTGGTGGAGTTTTGAATAATCAGCCCTGGACTGTACCTTCTATACAATCTGTACAGGGGCATCCAAGCACACTAATGCCTCATGCATCACAACTTGTCCCAAAGTCTGCCAATGAGGCTAAATCCAGTGTTGTTTTACAACCTTCTACAGTAGGCATAAAACCAAAACCAAGTGGAAGAAGTGAGCTTCCTGAGGATCTATTCACTGTAAAATATTCATCCTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCCACCACCTAGCATGGGTGTCtcaattcaatacaataatGTGATGCCCATGCCAAGTTTTCCACAaccatcaaaatcaacaaatccaTTTGATGTCAGCAACGAACCAACTCCAGTTCAAGCCCGAACATTTCCTTCCATGTCTTCTTTGCAAGGTGCTCTGCCTAGTGTAACACCTTCAGCTATAATGCAACCTTCAAACATGGGTAATCTATCTTTTGCCTGGAATCCACCCTCATCATCTTCATATGTATCAGTGCCGCCTCCTCAAGCACAAACTCTTGCACCACCAATGGGACCAGGGGCATCCATGGGGCAACAAATGGCAACTAACATGCCAATGCCAAGGCATCCAGGAATTGGGAGTTTTGCTACTGAGGGAACTGCTTTTGGCTTCTCAAATCCAGATCAGCAGCTGAGTGGTAGGTTGTCAACTGCTGCTACCCGAAGCCCCTCCTTCCATGCATGA 2097 0.4406 MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKEIYFKEWDPQRHSLPDSSNVDRLRDFIKHVYVDRRFTGERTYDKPPRVKGDKDDFYENKRMETYQGGPKSPPYEDTYERRYGDRSSPGGRSPGYDQENRQYGDYKRSPSRPPIINDWRREDRFGDGRKFEDHRIPDGNNKVESHSPERTKDLDSSSPPVVRPVREILGENVVPLRISEPPKTNSGQAVNGSALTQRNASSSSLASNPAVVKLETIKSLIDFDDDPEPPVAPAIPQAQQTTVAQLGMPANSNDNNWASFDVAPEAKASQGPSNVNPLESVLTQLSVPVSLPSQVSGVQGLVMGSALTATATGAPIVSSFSTFPASGASVTSSGLTISSTLNNAGQWASLQYLQEQPLFTAAASRPTIQQSTPPVGGVLNNQPWTVPSIQSVQGHPSTLMPHASQLVPKSANEAKSSVVLQPSTVGIKPKPSGRSELPEDLFTVKYSSFPAPVPGWQMGPPPSMGVSIQYNNVMPMPSFPQPSKSTNPFDVSNEPTPVQARTFPSMSSLQGALPSVTPSAIMQPSNMGNLSFAWNPPSSSSYVSVPPPQAQTLAPPMGPGASMGQQMATNMPMPRHPGIGSFATEGTAFGFSNPDQQLSGRLSTAATRSPSFHA 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3337 698 MobiDBLite consensus disorder prediction 198 237 - -
Ssu5g3337 698 PANTHER ARF GTPASE ACTIVATOR 1 697 - -
Ssu5g3337 698 CDD ArfGap_AGFG 12 122 - -
Ssu5g3337 698 MobiDBLite consensus disorder prediction 126 146 - -
Ssu5g3337 698 PANTHER ARFGAP/RECO-RELATED 1 697 IPR044820 GO:0005096
Ssu5g3337 698 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Ssu5g3337 698 MobiDBLite consensus disorder prediction 126 245 - -
Ssu5g3337 698 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Ssu5g3337 698 MobiDBLite consensus disorder prediction 261 291 - -
Ssu5g3337 698 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Ssu5g3337 698 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Ssu5g3337 698 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Ssu5g3337 698 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Ssu5g3337 698 MobiDBLite consensus disorder prediction 263 291 - -
Ssu5g3337 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Ssu5g3337 698 MobiDBLite consensus disorder prediction 673 698 - -
Ssu5g3337 698 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3337 Ssu-Chr5 82948312 82954656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3337 12 122 C2H2 Transcription Factor Family AT4G21160 34.188 3.24e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3337 - - gmx:100815114 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3337 5 82948312 82954656 Ssu5g3337 5 82948312 82954656 ECH