Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3334 atgaagaagaaggaagCATACTCCTCCTCCAATCTCACACTCGTGGTTGCCTTGTTTGTAGGCACACTCTCCCTCGCCGTGTGCGCCTCCCCTCTAGGCAATGGGGTCCTCACTGACGCCGAAGCCATGTACATTAGGCAACGCCAACTTCTCTACTACAGAGACGAGTTCGGCGACAGAGGAGAGAACGTGAGCGTAGACCCTTCTCTTGTCTTCGAAAACGACCGTCTCAGAAACGCTTATATTGCGTTGCAAGCTTGGAAGCAAGCCATTTTGTCGGATCCCCGGAACCAGACAACCGATTGGGTTGGATCCGACGTGTGCAGCTACACCGGAGTTTACTGTGCTCCCGCGCTGGACAACCCCAAGATCCGCACCGTGGCCGGCATTGATCTCAATCACTGCGACATTGCCGGTTATTTGCCCGAAGAGCTTGGCCTGCTGGTGGATCTCGCGCTCCTCCACCTGAACACAAATAGATTCTGTGGCACCGTGCCGCACAAGTTCGACAGGTTGAAACTGCTCTACGAGCTGGATCTCAGTAACAACCGGTTCGCGGGGAAGTTCCCTGAGGTGGTTCTGCGTCTTCCATCGCTCAAGTTCTTGGATCTCAGGTACAACGAATTCGAAGGAACGGTGCCGAGGGACTTGTTCGACAAGGATCTGGATGCTATTTTCATAAACGACAACCGTTTCGTCTTCGATCTCCCCGACAACTTCGGCAACTCGCCGGTCTCCGTCATCGTCCTCGCCAACAACAGGTTCCGCGGCTGCATTCCGGCGAGTCTGGGCAACATGTCCAACTTGAACGAGATTATCTTGATGAACAACGCATTCCGATCGTGCCTGCCTTCGGAGATCGGGCGGTTGAAGAACCTAACGGTGTTCGACGTGAGCTTCAACCAGCTGCTCGGTCCCTTGCCGGACGCCGTCGGAAATGCCGTCAGCCTGGAGCAGCTCGACGTGGCGCACAACTCACTCTCTGGTAAAATTCCGGCTAGCATCTGTATGTTGCCTCGCCTTCAGAACTTCACCTATTCGTCTAACTTCTTCACCGGCGAGCCTCCGGCCTGTCTCGCCTTGCCGGCGTTTGACGACAGGATAAACTGCTTACCGGCGAGACCGCTGCAGAGGCCTCCGGCGCAATGTAAGGCATTCTTGTCTAAGCCTGTCGACTGTAACTCCTTTAGGTGTAAACCATTTGTTCCTTCACCTCCATCACCTACAACCTCACCCATCACCACACCTACACTACTCACCTCCATCACCTACAACCCCTTCACCTCCATCACCTTCAACACCTTCACCACTACCCTCACCTTTACCTTCACCTCCATCACCTGCAAAACcttcaccaccatcaccactacctTCACCTACCTCACCTACAATCACCTGCAACACATCCTTCGCCACCACCGGTGGTGGGGCATTCCCCTCCTCCGCCTACAACAGTGCCAACACCTCCTTCACCACCACCAGTAG 1485 0.534 MKKKEAYSSSNLTLVVALFVGTLSLAVCASPLGNGVLTDAEAMYIRQRQLLYYRDEFGDRGENVSVDPSLVFENDRLRNAYIALQAWKQAILSDPRNQTTDWVGSDVCSYTGVYCAPALDNPKIRTVAGIDLNHCDIAGYLPEELGLLVDLALLHLNTNRFCGTVPHKFDRLKLLYELDLSNNRFAGKFPEVVLRLPSLKFLDLRYNEFEGTVPRDLFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFRGCIPASLGNMSNLNEIILMNNAFRSCLPSEIGRLKNLTVFDVSFNQLLGPLPDAVGNAVSLEQLDVAHNSLSGKIPASICMLPRLQNFTYSSNFFTGEPPACLALPAFDDRINCLPARPLQRPPAQCKAFLSKPVDCNSFRCKPFVPSPPSPTTSPITTPTLLTSITYNPFTSITFNTFTTTLTFTFTSITCKTFTTITTTFTYLTYNHLQHILRHHRWWGIPLLRLQQCQHLLHHHQ 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3334 494 Gene3D Ribonuclease Inhibitor 242 370 IPR032675 -
Ssu5g3334 494 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 417 - -
Ssu5g3334 494 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 14 417 - -
Ssu5g3334 494 Pfam Leucine rich repeat N-terminal domain 83 115 IPR013210 -
Ssu5g3334 494 Gene3D Ribonuclease Inhibitor 79 241 IPR032675 -
Ssu5g3334 494 Pfam Leucine Rich Repeat 316 336 IPR001611 GO:0005515
Ssu5g3334 494 Pfam Leucine rich repeat 151 208 IPR001611 GO:0005515
Ssu5g3334 494 SUPERFAMILY L domain-like 82 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3334 Ssu-Chr5 82903062 82904546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3334 1 398 Trihelix Transcription Factor Family AT4G18670 73.317 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3334 - - gmx:100814585 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3334 5 82903062 82904546 Ssu5g3334 5 82903062 82904546 ECH