Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3333 ATGACTGGCCTTACTAATGGCGATGCTGGCTCCGTCAACAAGGTCCCCACGGTCAAGTTCACCAAGCTCTTCATTAACGGAGATTTTGTTGACTCTGTATCAGGAAAGACGTTTGAGACGATAGATCCAAGAACGGGAGATGTTATAGCGAGGATCAGCGAGGGAGATAAAGAAGACATAGACATTGCTGTTAAAGCGGCACGCCAAGCATTTGATTCTGGTCCATGGCCTCGCCTGCCCGGCGCTGAGAGAGCAAAACTTTTGATGAAATGGGCGCAGCTAATTGATGAAAGCGCAGAAGAACTTGCTGCACTAGATGCCATTGATGCGGGCAAGTTGTACCATATGTGTAAGAATGTGGAAGTTCCCTCGGCAGCAAACACTATGCGTTACTATGCAGGTGCTGCTGATAAAATTCATGGAGAGGTGTTGAAAATGTCCCGAGAGTTCCATGCGTACACATTGCTGGAACCAGTTGGTGTTGTGGGACACATAATTCCCTGGAATTTTCCCACTACCATGTTCTACCTCAAGGTTAGCCCTTCTTTAGCTGCTGGCTGTACCATGGTCCTCAAGCCTGCCGAGCAAACACCCCTCTCTGCTTTGTTTTCTGCTCATCTTGCTAAATTGGCTGGAATCCCAGATGGAGTGCTCAATGTAGTGACCGGATTTGGCCCGACTGCTGGTGTTGCATTAAGCTCACACATGGATGTTGATTCGGTCAGCTTTACTGGTTCAACAAAAACAGGCCGTGAGATAATGCAGGCTGCAGCTAACAGTAACTTGAAACAAGTTTCACTTGAATTAGGAGGCAAGTCACCCCTCATAATTTTTGATGATGCTGATATAGACAAAGCTGCTGAGCTTGCTTTAATTGGCATCCTATATAACAAGGGAGAGGTTTGTGTTGCAAGTTCCCGTGTATTCGTTCAAGAAGGGATCTACaatgaatttgagaaaaaattggTGGAAAAGGCAAAATCTTGGGTCGTTGGGGATCCCTTTGATCCTAAAGTTCAACAAGGACCTCAGTGTGACAAGAAACAATTTGAAAAAGTTCTTTCATATATTGAGCAAGGAAAGAGAGAAGGAGCTACCCTTTTGACCGGGGGTAAAACAGTAGGCAACAAGGGCTACTTCATTGAGCCGACAATTTTTTCCAATATAAAGGAGGATATGCTTATAGTACAGGATGAAATTTTTGGCCCTGTGATGGCGCTGAAGAAGTTTaaGACCATTGAGGAAGCAATTAAGAGTGCTAACAATACTAAGTATGGCCTAGCAGCAGGCATAGTGACCAAGAATTTGGATACAGCAAACACAGTGTCAAGGTCCATTCGTGCAGGCACCATTTGGATCAACTGCTATTTTGCCTTTGGAGATGATGTTCCCTTTGGAGGGTATAAGATGAGTGGATTTGGAAAAGATCATGGATTAGAAGCCCTTCACAAGTACCTTCAAATGACTGCTCTCTCTAACTCCGGTAGTGGCCACGACAACTCCTTCCTCAAGAAGCCCACCATCAAGTTTACCAAGCTCTTCATCAATGGAAATTTTGTTGATTCCATATCAGgaAGGACATTTGACACTATAGATCCCAGAACAGAAGAGGTAATTGCAAGAGTTAGTGAGGGAGATAAAGAAGACATTGATATCGCTGTTAAAGCAGCACGTAAGGCATTTGACTCAGGTCCATGGCCTCGCTTGCCCGGCTCTGAAAGGGCAAAAATTATGATGAAATGGGCAGACCTAATTGATCAAAACATAGAAGAACTAGCGGCACTAGATACAATTGATGCTGGCAAGCTGTACTATGTTAACAAGGTTGGGGAAATTCCTGCAGCCACAAATGCGCTACGTTACTATGCAGGTGCTGCTGATAAAATTCATGGCGACGTATTAAAAATGAACGGGGAGTTCCATGCGTATACACTGTTGGAACCAGTTGGTGTTGTGGGACACATAATTCCCTGGAATGCCCCCAGCCTTTCGTTTTTCATCAAGGTTAGCCCTTCCTTAGCTGCAGGTTGCACCATGGTCCTCAAGCCTGCTGAACAAACAACTCTCTCTGCTTTGTTTTATGCTCATCTCGCTAAGCTGGCTGGAATCCCAGATGGAGTGCTCAATGTTGTACCCGGATTTGGCCCAACCGCTGGTGCAGCAATAAGCTCACACATGGACATTGATGCAGTTAGTTTTACTGGTTCAATTGAAGTAGGGCGTGAAGTGATGCAGGCTGCAGCTAGGAGCAATTTAAAACCGGTTTCGCTTGAATTAGGAGGCAAGTCTCCTCTCATTATTTTCGATGATGCTGATATAGACAAAGCTGCCGAGCTTGCTCTCCTTGGCATCCTGACTAACAAGGGAGAAATTTGCGTTGCAAGTTCTCGTGTGTTCGTCCAGGAAGGGATCTACGATGAACTTGAGAAAAAGTTGGTGAAGAAGGCAAAATCTTGGGTCGTTGGGGATCCTTTTGATCCCAAATCACAACAAGGGCCTCAAGCTAACAGAAACCAATTGGAAAAAATACTTTCCTATATTGAGCATGGAAAGAGAGAAGGAGCCACCCTTTTGACCGGAGGTAATACCGTGGGCAACAAAGGCTTCTACATTGAACCCACAATTTTTTCTAATGTAAAGGAGGACATGCTTATAGCACGAGATGAAATATTTGGCCCTGTACTGGCGCTGATGAAGTTTAAGACCATTGAAGAAGCAATTAAAAGTGCTAACAATACCAAGTATGGCCTAGCGGCAGGGATTGTGACAAAGAATTTGGATACTGCAAACACTATGTCAAGGTCCATTCGTGCAGGCATTATTTGGGTCAATTGCTATTTAACCACAGGGAGTGACGTTCCTTTTGGGGGGTATAAGATGAGCGGATTTGGAAGAGATTTGGGGTTGGAGGCCCTTCACAAGTACTTACAAGTTAAGTCTGTCGTAACACCTATTCACAATTCTCCTTggctttga 2976 0.4432 MTGLTNGDAGSVNKVPTVKFTKLFINGDFVDSVSGKTFETIDPRTGDVIARISEGDKEDIDIAVKAARQAFDSGPWPRLPGAERAKLLMKWAQLIDESAEELAALDAIDAGKLYHMCKNVEVPSAANTMRYYAGAADKIHGEVLKMSREFHAYTLLEPVGVVGHIIPWNFPTTMFYLKVSPSLAAGCTMVLKPAEQTPLSALFSAHLAKLAGIPDGVLNVVTGFGPTAGVALSSHMDVDSVSFTGSTKTGREIMQAAANSNLKQVSLELGGKSPLIIFDDADIDKAAELALIGILYNKGEVCVASSRVFVQEGIYNEFEKKLVEKAKSWVVGDPFDPKVQQGPQCDKKQFEKVLSYIEQGKREGATLLTGGKTVGNKGYFIEPTIFSNIKEDMLIVQDEIFGPVMALKKFKTIEEAIKSANNTKYGLAAGIVTKNLDTANTVSRSIRAGTIWINCYFAFGDDVPFGGYKMSGFGKDHGLEALHKYLQMTALSNSGSGHDNSFLKKPTIKFTKLFINGNFVDSISGRTFDTIDPRTEEVIARVSEGDKEDIDIAVKAARKAFDSGPWPRLPGSERAKIMMKWADLIDQNIEELAALDTIDAGKLYYVNKVGEIPAATNALRYYAGAADKIHGDVLKMNGEFHAYTLLEPVGVVGHIIPWNAPSLSFFIKVSPSLAAGCTMVLKPAEQTTLSALFYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMDIDAVSFTGSIEVGREVMQAAARSNLKPVSLELGGKSPLIIFDDADIDKAAELALLGILTNKGEICVASSRVFVQEGIYDELEKKLVKKAKSWVVGDPFDPKSQQGPQANRNQLEKILSYIEHGKREGATLLTGGNTVGNKGFYIEPTIFSNVKEDMLIARDEIFGPVLALMKFKTIEEAIKSANNTKYGLAAGIVTKNLDTANTMSRSIRAGIIWVNCYLTTGSDVPFGGYKMSGFGRDLGLEALHKYLQVKSVVTPIHNSPWL 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3333 991 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 515 979 IPR016162 GO:0016491
Ssu5g3333 991 SUPERFAMILY ALDH-like 504 986 IPR016161 GO:0016491
Ssu5g3333 991 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 757 764 IPR029510 GO:0016491
Ssu5g3333 991 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE RF2C 492 991 - -
Ssu5g3333 991 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE RF2C 8 490 - -
Ssu5g3333 991 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 492 991 - -
Ssu5g3333 991 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 8 490 - -
Ssu5g3333 991 SUPERFAMILY ALDH-like 15 490 IPR016161 GO:0016491
Ssu5g3333 991 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 267 274 IPR029510 GO:0016491
Ssu5g3333 991 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 785 796 IPR016160 GO:0016491
Ssu5g3333 991 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 488 IPR016162 GO:0016491
Ssu5g3333 991 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 460 IPR016163 GO:0016620
Ssu5g3333 991 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 761 950 IPR016163 GO:0016620
Ssu5g3333 991 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Ssu5g3333 991 Pfam Aldehyde dehydrogenase family 520 981 IPR015590 GO:0016491
Ssu5g3333 991 Pfam Aldehyde dehydrogenase family 29 489 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3333 Ssu-Chr5 82854146 82877667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3333 494 991 Aldehyde Dehydrogenase Gene Family AT3G24503 68.337 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3333 K12355 K00128 gmx:100527654 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3333 5 82854146 82877667 Ssu5g3333 5 82854146 82877667 PCT